miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33165 5' -57.6 NC_007497.1 + 35566 0.66 0.504777
Target:  5'- ---cGGcCCaUGCCgCGCGCGAUcgcgucGGCCa -3'
miRNA:   3'- aauuCCaGG-ACGG-GCGCGUUGa-----CCGG- -5'
33165 5' -57.6 NC_007497.1 + 33405 0.66 0.504777
Target:  5'- --cGGGcgCCgcccGCCCGCGUccGAUgGGCCa -3'
miRNA:   3'- aauUCCa-GGa---CGGGCGCG--UUGaCCGG- -5'
33165 5' -57.6 NC_007497.1 + 3424 0.66 0.498453
Target:  5'- -cGAGGUCCgcgagaugcuggauuUGCCuCGCGCuGACgauccGGUCg -3'
miRNA:   3'- aaUUCCAGG---------------ACGG-GCGCG-UUGa----CCGG- -5'
33165 5' -57.6 NC_007497.1 + 38743 0.66 0.494257
Target:  5'- --uGGGUUUUGCCC-UGCAguGCcGGCCu -3'
miRNA:   3'- aauUCCAGGACGGGcGCGU--UGaCCGG- -5'
33165 5' -57.6 NC_007497.1 + 21252 0.66 0.477638
Target:  5'- -gAAGGccguauugccguaucUCCUGgUCGCGCuGCUGGgCg -3'
miRNA:   3'- aaUUCC---------------AGGACgGGCGCGuUGACCgG- -5'
33165 5' -57.6 NC_007497.1 + 2184 0.67 0.453242
Target:  5'- -----aUCC-GCCCGCGCAg--GGCCa -3'
miRNA:   3'- aauuccAGGaCGGGCGCGUugaCCGG- -5'
33165 5' -57.6 NC_007497.1 + 4431 0.68 0.385319
Target:  5'- -cGAGGcaucauuUCC-GUCCGCGCGGaagGGCCg -3'
miRNA:   3'- aaUUCC-------AGGaCGGGCGCGUUga-CCGG- -5'
33165 5' -57.6 NC_007497.1 + 14425 0.68 0.377201
Target:  5'- -gAAGGUgUUucGCCgGCGCAcGCUGGCg -3'
miRNA:   3'- aaUUCCAgGA--CGGgCGCGU-UGACCGg -5'
33165 5' -57.6 NC_007497.1 + 34693 0.68 0.368317
Target:  5'- ---cGGcagCCUGCgCGCGCAGaUGGCUu -3'
miRNA:   3'- aauuCCa--GGACGgGCGCGUUgACCGG- -5'
33165 5' -57.6 NC_007497.1 + 2298 0.68 0.359578
Target:  5'- -cGGGG-CCUGCUCGgGCAAC-GGUg -3'
miRNA:   3'- aaUUCCaGGACGGGCgCGUUGaCCGg -5'
33165 5' -57.6 NC_007497.1 + 2523 0.69 0.337541
Target:  5'- ---cGGUCCUGCCacuucugcccgggcgUGCGCGccgGC-GGCCg -3'
miRNA:   3'- aauuCCAGGACGG---------------GCGCGU---UGaCCGG- -5'
33165 5' -57.6 NC_007497.1 + 12791 0.69 0.302527
Target:  5'- gUGAGGgcgCCUcaaGCCgGCGCGGC-GGCUc -3'
miRNA:   3'- aAUUCCa--GGA---CGGgCGCGUUGaCCGG- -5'
33165 5' -57.6 NC_007497.1 + 24971 0.7 0.29497
Target:  5'- -gAAGGcCCUGaaaaugcaCCGCGCugauCUGGCUg -3'
miRNA:   3'- aaUUCCaGGACg-------GGCGCGuu--GACCGG- -5'
33165 5' -57.6 NC_007497.1 + 31141 0.7 0.266213
Target:  5'- --cGGcGUCCccugcgGCCCGUGCGGC-GGCCc -3'
miRNA:   3'- aauUC-CAGGa-----CGGGCGCGUUGaCCGG- -5'
33165 5' -57.6 NC_007497.1 + 35622 1.08 0.000425
Target:  5'- cUUAAGGUCCUGCCCGCGCAACUGGCCc -3'
miRNA:   3'- -AAUUCCAGGACGGGCGCGUUGACCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.