miRNA display CGI


Results 21 - 40 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33166 5' -53.9 NC_007497.1 + 28458 0.69 0.593746
Target:  5'- uGGCgUCGAgcaGCGCGUAUgCGUU-CCg -3'
miRNA:   3'- gUCGgAGCUag-CGCGCAUG-GCAAuGG- -5'
33166 5' -53.9 NC_007497.1 + 28604 0.69 0.590416
Target:  5'- aCGGUUUCGAagaacgucgccgucUCgGUGCGUGCCGggAUCa -3'
miRNA:   3'- -GUCGGAGCU--------------AG-CGCGCAUGGCaaUGG- -5'
33166 5' -53.9 NC_007497.1 + 5613 0.69 0.581553
Target:  5'- aCAGCCUcaaCGAUCagcgucaGCGCGUACgG--ACCg -3'
miRNA:   3'- -GUCGGA---GCUAG-------CGCGCAUGgCaaUGG- -5'
33166 5' -53.9 NC_007497.1 + 2538 0.69 0.571615
Target:  5'- -uGCC-CGggCGUGCGcGCCGgcgGCCg -3'
miRNA:   3'- guCGGaGCuaGCGCGCaUGGCaa-UGG- -5'
33166 5' -53.9 NC_007497.1 + 32455 0.69 0.571615
Target:  5'- uGGCCgcCGGUCGCaagauggaaccCGUACgCGUUGCCg -3'
miRNA:   3'- gUCGGa-GCUAGCGc----------GCAUG-GCAAUGG- -5'
33166 5' -53.9 NC_007497.1 + 39663 0.69 0.549687
Target:  5'- gCAGCCcguUCGGcUUGUuCGUGCCGUcGCCa -3'
miRNA:   3'- -GUCGG---AGCU-AGCGcGCAUGGCAaUGG- -5'
33166 5' -53.9 NC_007497.1 + 11614 0.69 0.549687
Target:  5'- gCGGCCUaCGAUCGCGcCGUGCa---GCUc -3'
miRNA:   3'- -GUCGGA-GCUAGCGC-GCAUGgcaaUGG- -5'
33166 5' -53.9 NC_007497.1 + 31406 0.7 0.538819
Target:  5'- -uGCCgUCGuuaccUUGCGUGgcaACCGUUACCg -3'
miRNA:   3'- guCGG-AGCu----AGCGCGCa--UGGCAAUGG- -5'
33166 5' -53.9 NC_007497.1 + 26796 0.7 0.50669
Target:  5'- -cGCCgucgUCGAUCGcCGCGUACU--UGCCc -3'
miRNA:   3'- guCGG----AGCUAGC-GCGCAUGGcaAUGG- -5'
33166 5' -53.9 NC_007497.1 + 4197 0.7 0.50669
Target:  5'- aAGCgUCGAUgGCGCGcGCCGgguauuCCc -3'
miRNA:   3'- gUCGgAGCUAgCGCGCaUGGCaau---GG- -5'
33166 5' -53.9 NC_007497.1 + 23305 0.7 0.50669
Target:  5'- gAGCCUCGAUCucgcgGCGCugcucuucgaGUugCGUUuCCa -3'
miRNA:   3'- gUCGGAGCUAG-----CGCG----------CAugGCAAuGG- -5'
33166 5' -53.9 NC_007497.1 + 40381 0.7 0.505633
Target:  5'- uGGCCcu--UCGUGCGUaacgaguucgucaACCGUUACCg -3'
miRNA:   3'- gUCGGagcuAGCGCGCA-------------UGGCAAUGG- -5'
33166 5' -53.9 NC_007497.1 + 41615 0.7 0.503521
Target:  5'- gGGCCUCGAcagcaucagcaucaUCaaaaGCGCGcugGCCGgcGCCg -3'
miRNA:   3'- gUCGGAGCU--------------AG----CGCGCa--UGGCaaUGG- -5'
33166 5' -53.9 NC_007497.1 + 3864 0.71 0.455093
Target:  5'- gCAGCCUCGGUCauCGCGaugGCCGgcgACg -3'
miRNA:   3'- -GUCGGAGCUAGc-GCGCa--UGGCaa-UGg -5'
33166 5' -53.9 NC_007497.1 + 3843 0.71 0.455093
Target:  5'- gCGGCgUCGA-CGUGCG-GCCGaUUGCCc -3'
miRNA:   3'- -GUCGgAGCUaGCGCGCaUGGC-AAUGG- -5'
33166 5' -53.9 NC_007497.1 + 38762 0.72 0.396218
Target:  5'- cCGGCCUCGAUCGCG-GUGgucaucgcauccuCCGUcucgaagACCu -3'
miRNA:   3'- -GUCGGAGCUAGCGCgCAU-------------GGCAa------UGG- -5'
33166 5' -53.9 NC_007497.1 + 24396 0.73 0.361241
Target:  5'- -cGuCCUCGAUCGCGCGcaggaauacGCCGagUGCCc -3'
miRNA:   3'- guC-GGAGCUAGCGCGCa--------UGGCa-AUGG- -5'
33166 5' -53.9 NC_007497.1 + 11335 0.73 0.344157
Target:  5'- uCGGCCgcgcaGGUCGCGCGUAUCGgcgucaaugcGCCu -3'
miRNA:   3'- -GUCGGag---CUAGCGCGCAUGGCaa--------UGG- -5'
33166 5' -53.9 NC_007497.1 + 9217 0.75 0.260747
Target:  5'- uGGCCgacgCGAUCGCGCGcggcauggGCCGggGCa -3'
miRNA:   3'- gUCGGa---GCUAGCGCGCa-------UGGCaaUGg -5'
33166 5' -53.9 NC_007497.1 + 9930 0.79 0.143555
Target:  5'- gCGGCCgUGAUCGCGCGcgagACCGcgGCCg -3'
miRNA:   3'- -GUCGGaGCUAGCGCGCa---UGGCaaUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.