miRNA display CGI


Results 21 - 40 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33167 3' -56.2 NC_007497.1 + 11675 0.67 0.572926
Target:  5'- gCCGCAau-GCGGUAgcagcucaucUGGCCGCCAUUu -3'
miRNA:   3'- -GGCGUaguCGCCGU----------GCUGGUGGUAGu -5'
33167 3' -56.2 NC_007497.1 + 32626 0.67 0.572926
Target:  5'- gCCGCucgcgCAGCGaaccGCGCGAgauCCGCgAUCAu -3'
miRNA:   3'- -GGCGua---GUCGC----CGUGCU---GGUGgUAGU- -5'
33167 3' -56.2 NC_007497.1 + 27316 0.67 0.562019
Target:  5'- aCGCcgUAGC-GCGCGAUC-CCGUCu -3'
miRNA:   3'- gGCGuaGUCGcCGUGCUGGuGGUAGu -5'
33167 3' -56.2 NC_007497.1 + 17098 0.67 0.562019
Target:  5'- -gGCAgauGCGGCGCGGCCugCu--- -3'
miRNA:   3'- ggCGUaguCGCCGUGCUGGugGuagu -5'
33167 3' -56.2 NC_007497.1 + 36442 0.67 0.560931
Target:  5'- gUCGCcgAUCagcgaggAGCGGUACGACUugCAUgCAg -3'
miRNA:   3'- -GGCG--UAG-------UCGCCGUGCUGGugGUA-GU- -5'
33167 3' -56.2 NC_007497.1 + 30218 0.67 0.551169
Target:  5'- aCGUGcCAGUGGCGCuACCGCgGUCc -3'
miRNA:   3'- gGCGUaGUCGCCGUGcUGGUGgUAGu -5'
33167 3' -56.2 NC_007497.1 + 28746 0.67 0.551169
Target:  5'- gCCGCugauuuaCGGCGaCACGAUCACCGguUCGa -3'
miRNA:   3'- -GGCGua-----GUCGCcGUGCUGGUGGU--AGU- -5'
33167 3' -56.2 NC_007497.1 + 36543 0.67 0.551169
Target:  5'- cCCG-GUCuGCGGCGaGGCCGCCGagcUCGa -3'
miRNA:   3'- -GGCgUAGuCGCCGUgCUGGUGGU---AGU- -5'
33167 3' -56.2 NC_007497.1 + 27484 0.67 0.551169
Target:  5'- aCCGgAUCuGaCGGCAUGuCCGCCGa-- -3'
miRNA:   3'- -GGCgUAGuC-GCCGUGCuGGUGGUagu -5'
33167 3' -56.2 NC_007497.1 + 23195 0.67 0.540384
Target:  5'- cCCGCAUCGccggccagcaguGCGaGCGCGACUACgAc-- -3'
miRNA:   3'- -GGCGUAGU------------CGC-CGUGCUGGUGgUagu -5'
33167 3' -56.2 NC_007497.1 + 26753 0.67 0.540384
Target:  5'- aCCGa--UGGCGGCACGACCGUCAcCGg -3'
miRNA:   3'- -GGCguaGUCGCCGUGCUGGUGGUaGU- -5'
33167 3' -56.2 NC_007497.1 + 29555 0.67 0.52967
Target:  5'- uUCGCGgccauaCAGCGGCGCGAcauauCCGCUggGUCc -3'
miRNA:   3'- -GGCGUa-----GUCGCCGUGCU-----GGUGG--UAGu -5'
33167 3' -56.2 NC_007497.1 + 24287 0.67 0.528603
Target:  5'- gCCGCcaacGUCGGCGGCcuguuacACGAUCcCCGUUc -3'
miRNA:   3'- -GGCG----UAGUCGCCG-------UGCUGGuGGUAGu -5'
33167 3' -56.2 NC_007497.1 + 2446 0.67 0.519036
Target:  5'- gCCGC-UgGGCGuucGCGCGGCgacgCGCCAUCAc -3'
miRNA:   3'- -GGCGuAgUCGC---CGUGCUG----GUGGUAGU- -5'
33167 3' -56.2 NC_007497.1 + 39282 0.68 0.498029
Target:  5'- gCGCGUCGGCGGC--GGCCugCu--- -3'
miRNA:   3'- gGCGUAGUCGCCGugCUGGugGuagu -5'
33167 3' -56.2 NC_007497.1 + 33910 0.68 0.498029
Target:  5'- aCGCuUCGGCGGcCAUG-CCGCCG-CGa -3'
miRNA:   3'- gGCGuAGUCGCC-GUGCuGGUGGUaGU- -5'
33167 3' -56.2 NC_007497.1 + 25197 0.68 0.486639
Target:  5'- aCCGCccgacauAUCGGCGGCGacACUuCCGUCAa -3'
miRNA:   3'- -GGCG-------UAGUCGCCGUgcUGGuGGUAGU- -5'
33167 3' -56.2 NC_007497.1 + 43768 0.69 0.457225
Target:  5'- aCCGUGUCAGUgucGGC-CGcaACCACCuUCAa -3'
miRNA:   3'- -GGCGUAGUCG---CCGuGC--UGGUGGuAGU- -5'
33167 3' -56.2 NC_007497.1 + 14799 0.69 0.457225
Target:  5'- aCUGC-UCGGCGGCAaaUGACCGCgGcUCu -3'
miRNA:   3'- -GGCGuAGUCGCCGU--GCUGGUGgU-AGu -5'
33167 3' -56.2 NC_007497.1 + 14939 0.69 0.457225
Target:  5'- -aGCGUCGGCGGCgACGAUUucgagauuucgGCCAUg- -3'
miRNA:   3'- ggCGUAGUCGCCG-UGCUGG-----------UGGUAgu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.