Results 21 - 34 of 34 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33167 | 5' | -54.4 | NC_007497.1 | + | 307 | 0.7 | 0.476279 |
Target: 5'- aUUGGAG-AGCCGCuUGGCaCGaUCGGCGa -3' miRNA: 3'- cAACUUUaUCGGCG-GCCG-GC-AGCUGC- -5' |
|||||||
33167 | 5' | -54.4 | NC_007497.1 | + | 39239 | 0.7 | 0.47011 |
Target: 5'- -aUGAAGgucGCCGCCagcgaguaagcgucgGGCCGUCG-CGa -3' miRNA: 3'- caACUUUau-CGGCGG---------------CCGGCAGCuGC- -5' |
|||||||
33167 | 5' | -54.4 | NC_007497.1 | + | 13626 | 0.7 | 0.46602 |
Target: 5'- --aGAGcgGGCCGCCgcaugGGCCGcCGcACGg -3' miRNA: 3'- caaCUUuaUCGGCGG-----CCGGCaGC-UGC- -5' |
|||||||
33167 | 5' | -54.4 | NC_007497.1 | + | 23260 | 0.71 | 0.407035 |
Target: 5'- --cGGGAUGGCgGgCGGCUG-CGACGa -3' miRNA: 3'- caaCUUUAUCGgCgGCCGGCaGCUGC- -5' |
|||||||
33167 | 5' | -54.4 | NC_007497.1 | + | 41030 | 0.72 | 0.388437 |
Target: 5'- --aGAAGUcGCCGCCGGgCGaaUUGACGu -3' miRNA: 3'- caaCUUUAuCGGCGGCCgGC--AGCUGC- -5' |
|||||||
33167 | 5' | -54.4 | NC_007497.1 | + | 41157 | 0.72 | 0.37935 |
Target: 5'- --cGAAAUcGCCGCCGcaUCGUCGGCGu -3' miRNA: 3'- caaCUUUAuCGGCGGCc-GGCAGCUGC- -5' |
|||||||
33167 | 5' | -54.4 | NC_007497.1 | + | 9639 | 0.72 | 0.361608 |
Target: 5'- -------cGGCgCGCCGGCCG-CGACGu -3' miRNA: 3'- caacuuuaUCG-GCGGCCGGCaGCUGC- -5' |
|||||||
33167 | 5' | -54.4 | NC_007497.1 | + | 23630 | 0.73 | 0.327888 |
Target: 5'- -------cGGCCGCCGGCCGU-GACc -3' miRNA: 3'- caacuuuaUCGGCGGCCGGCAgCUGc -5' |
|||||||
33167 | 5' | -54.4 | NC_007497.1 | + | 26555 | 0.75 | 0.228493 |
Target: 5'- -gUGAcGUcGCUGCCGGCCGUCaGCGc -3' miRNA: 3'- caACUuUAuCGGCGGCCGGCAGcUGC- -5' |
|||||||
33167 | 5' | -54.4 | NC_007497.1 | + | 32449 | 0.76 | 0.205195 |
Target: 5'- -gUGAcGUGGCCGCCGGUCGcaaGAUGg -3' miRNA: 3'- caACUuUAUCGGCGGCCGGCag-CUGC- -5' |
|||||||
33167 | 5' | -54.4 | NC_007497.1 | + | 37125 | 0.77 | 0.189096 |
Target: 5'- ------cUGGUCGgCGGCCGUCGACGg -3' miRNA: 3'- caacuuuAUCGGCgGCCGGCAGCUGC- -5' |
|||||||
33167 | 5' | -54.4 | NC_007497.1 | + | 4977 | 0.8 | 0.120817 |
Target: 5'- -cUGAAA-AGCCGCuggccggugCGGCCGUCGGCGg -3' miRNA: 3'- caACUUUaUCGGCG---------GCCGGCAGCUGC- -5' |
|||||||
33167 | 5' | -54.4 | NC_007497.1 | + | 16336 | 0.9 | 0.024558 |
Target: 5'- uGUUGAAcggAGCgCGCCGGCCGUCGGCGu -3' miRNA: 3'- -CAACUUua-UCG-GCGGCCGGCAGCUGC- -5' |
|||||||
33167 | 5' | -54.4 | NC_007497.1 | + | 36097 | 1.08 | 0.001112 |
Target: 5'- cGUUGAAAUAGCCGCCGGCCGUCGACGc -3' miRNA: 3'- -CAACUUUAUCGGCGGCCGGCAGCUGC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home