Results 1 - 14 of 14 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33168 | 3' | -51.5 | NC_007497.1 | + | 22885 | 0.66 | 0.844654 |
Target: 5'- cCUUCGGguUC--GUUGGCGACUggCg -3' miRNA: 3'- uGAAGCCguAGuaCAGCCGUUGGaaG- -5' |
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33168 | 3' | -51.5 | NC_007497.1 | + | 15939 | 0.66 | 0.835424 |
Target: 5'- --gUCGGCuUCGUGUUuGaGCAACCgUCg -3' miRNA: 3'- ugaAGCCGuAGUACAG-C-CGUUGGaAG- -5' |
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33168 | 3' | -51.5 | NC_007497.1 | + | 15522 | 0.66 | 0.825957 |
Target: 5'- -gUUCGcGCAUCAcaUGUaCGGCcGCCUg- -3' miRNA: 3'- ugAAGC-CGUAGU--ACA-GCCGuUGGAag -5' |
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33168 | 3' | -51.5 | NC_007497.1 | + | 29891 | 0.66 | 0.844654 |
Target: 5'- --cUCGGCGagugCGUGaUCGGCAaucGCCUg- -3' miRNA: 3'- ugaAGCCGUa---GUAC-AGCCGU---UGGAag -5' |
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33168 | 3' | -51.5 | NC_007497.1 | + | 37928 | 0.66 | 0.853638 |
Target: 5'- aACgcCGGCcgCAUGaaUGGCucuGCCUUCa -3' miRNA: 3'- -UGaaGCCGuaGUACa-GCCGu--UGGAAG- -5' |
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33168 | 3' | -51.5 | NC_007497.1 | + | 1585 | 0.67 | 0.796247 |
Target: 5'- ---cUGGUAUCgAUGgCGGCGGCCUUg -3' miRNA: 3'- ugaaGCCGUAG-UACaGCCGUUGGAAg -5' |
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33168 | 3' | -51.5 | NC_007497.1 | + | 3850 | 0.67 | 0.775471 |
Target: 5'- gGCUUgCGGC-----GUCGGCAGCCUcggUCa -3' miRNA: 3'- -UGAA-GCCGuaguaCAGCCGUUGGA---AG- -5' |
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33168 | 3' | -51.5 | NC_007497.1 | + | 7720 | 0.67 | 0.775471 |
Target: 5'- ---gCGGCAguaCAccugGUCGGCGGCCgUCg -3' miRNA: 3'- ugaaGCCGUa--GUa---CAGCCGUUGGaAG- -5' |
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33168 | 3' | -51.5 | NC_007497.1 | + | 13904 | 0.67 | 0.754039 |
Target: 5'- uACgucgUCGGCGUCGauUGUUGGCGGgCa-- -3' miRNA: 3'- -UGa---AGCCGUAGU--ACAGCCGUUgGaag -5' |
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33168 | 3' | -51.5 | NC_007497.1 | + | 29910 | 0.69 | 0.686865 |
Target: 5'- ---cCGGCAUCAgcGUCGGCGGCg--- -3' miRNA: 3'- ugaaGCCGUAGUa-CAGCCGUUGgaag -5' |
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33168 | 3' | -51.5 | NC_007497.1 | + | 40229 | 0.72 | 0.471831 |
Target: 5'- cCUUCGccaacGCGUCGgacGUCGGCAgacccGCCUUCa -3' miRNA: 3'- uGAAGC-----CGUAGUa--CAGCCGU-----UGGAAG- -5' |
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33168 | 3' | -51.5 | NC_007497.1 | + | 31385 | 0.74 | 0.381719 |
Target: 5'- gAUUUCGGCGUCAUGcCGGaagcggaugUAGCUUUCg -3' miRNA: 3'- -UGAAGCCGUAGUACaGCC---------GUUGGAAG- -5' |
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33168 | 3' | -51.5 | NC_007497.1 | + | 23450 | 0.75 | 0.336861 |
Target: 5'- aGCggCGGCcgccuUCAUGUCGGCGAUCUc- -3' miRNA: 3'- -UGaaGCCGu----AGUACAGCCGUUGGAag -5' |
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33168 | 3' | -51.5 | NC_007497.1 | + | 36291 | 1.11 | 0.001291 |
Target: 5'- cACUUCGGCAUCAUGUCGGCAACCUUCa -3' miRNA: 3'- -UGAAGCCGUAGUACAGCCGUUGGAAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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