miRNA display CGI


Results 21 - 40 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33168 5' -52.8 NC_007497.1 + 34772 0.67 0.76917
Target:  5'- uUGGccgcGGCgGCCuccaACGCGACgCGUCGCu -3'
miRNA:   3'- -ACCuu--UUGaCGGc---UGCGCUG-GUAGCG- -5'
33168 5' -52.8 NC_007497.1 + 26431 0.67 0.76917
Target:  5'- cGGggGACgGCuCGGCagGCGACaCGcagCGCa -3'
miRNA:   3'- aCCuuUUGaCG-GCUG--CGCUG-GUa--GCG- -5'
33168 5' -52.8 NC_007497.1 + 14509 0.67 0.758695
Target:  5'- cGGGAA--UGCCGG-GCcGCCGUCGUu -3'
miRNA:   3'- aCCUUUugACGGCUgCGcUGGUAGCG- -5'
33168 5' -52.8 NC_007497.1 + 26302 0.67 0.758695
Target:  5'- -cGAAAACU-UCGugGCG-UCGUCGCg -3'
miRNA:   3'- acCUUUUGAcGGCugCGCuGGUAGCG- -5'
33168 5' -52.8 NC_007497.1 + 29803 0.67 0.758695
Target:  5'- cGGuc-GgaGUCGGCGCGACauuUCGCc -3'
miRNA:   3'- aCCuuuUgaCGGCUGCGCUGgu-AGCG- -5'
33168 5' -52.8 NC_007497.1 + 29876 0.67 0.755526
Target:  5'- cGGGGcgaaaugucgcgccGACU-CCGAC-CGACCAguUCGCg -3'
miRNA:   3'- aCCUU--------------UUGAcGGCUGcGCUGGU--AGCG- -5'
33168 5' -52.8 NC_007497.1 + 29200 0.67 0.748084
Target:  5'- gGGAucGCUGgcacgcguuuCgGGCGCGugCAUCGg -3'
miRNA:   3'- aCCUuuUGAC----------GgCUGCGCugGUAGCg -5'
33168 5' -52.8 NC_007497.1 + 8697 0.67 0.748084
Target:  5'- aGGccGGCgucuCCGAagaaguguuUGCGGCCGUCGCa -3'
miRNA:   3'- aCCuuUUGac--GGCU---------GCGCUGGUAGCG- -5'
33168 5' -52.8 NC_007497.1 + 33632 0.67 0.748084
Target:  5'- -aGAGAGCUGCUu-CGCGACCuccAUCuGCu -3'
miRNA:   3'- acCUUUUGACGGcuGCGCUGG---UAG-CG- -5'
33168 5' -52.8 NC_007497.1 + 15456 0.67 0.748084
Target:  5'- aGGGAAgcGCUGUCGcauuCGCGuACggaGUCGCg -3'
miRNA:   3'- aCCUUU--UGACGGCu---GCGC-UGg--UAGCG- -5'
33168 5' -52.8 NC_007497.1 + 40941 0.67 0.748084
Target:  5'- --cGAGGCUGCCGACGCcgcaagccCCAUCa- -3'
miRNA:   3'- accUUUUGACGGCUGCGcu------GGUAGcg -5'
33168 5' -52.8 NC_007497.1 + 33461 0.67 0.737348
Target:  5'- cGcGAccuGCgcgGCCGACuGCG-CCAUCGUg -3'
miRNA:   3'- aC-CUuu-UGa--CGGCUG-CGCuGGUAGCG- -5'
33168 5' -52.8 NC_007497.1 + 306 0.67 0.7265
Target:  5'- uUGGAGAGCcgcuugGCaCGAUcgGCGAUCAcaucgUCGCg -3'
miRNA:   3'- -ACCUUUUGa-----CG-GCUG--CGCUGGU-----AGCG- -5'
33168 5' -52.8 NC_007497.1 + 32585 0.67 0.7265
Target:  5'- cGGcgGACUGgCGG-GCGGCCugucggauggcGUCGCg -3'
miRNA:   3'- aCCuuUUGACgGCUgCGCUGG-----------UAGCG- -5'
33168 5' -52.8 NC_007497.1 + 35507 0.67 0.7265
Target:  5'- cGGcaag--GUCGAUGUGACCGUCGg -3'
miRNA:   3'- aCCuuuugaCGGCUGCGCUGGUAGCg -5'
33168 5' -52.8 NC_007497.1 + 24912 0.67 0.7265
Target:  5'- -aGAucGCUGuuGACcgccuggcCGACCAUCGCc -3'
miRNA:   3'- acCUuuUGACggCUGc-------GCUGGUAGCG- -5'
33168 5' -52.8 NC_007497.1 + 27112 0.67 0.714453
Target:  5'- cGGAuacGGCcGCCGAUGCGccgccccGCCuugCGCg -3'
miRNA:   3'- aCCUu--UUGaCGGCUGCGC-------UGGua-GCG- -5'
33168 5' -52.8 NC_007497.1 + 2174 0.68 0.704519
Target:  5'- cGGGAAg--GCUGGCGCGAUgAagGCg -3'
miRNA:   3'- aCCUUUugaCGGCUGCGCUGgUagCG- -5'
33168 5' -52.8 NC_007497.1 + 27381 0.68 0.69341
Target:  5'- cGGGucguuauAGCUGaCGAgCGCGACCGUguacCGCg -3'
miRNA:   3'- aCCUu------UUGACgGCU-GCGCUGGUA----GCG- -5'
33168 5' -52.8 NC_007497.1 + 17270 0.68 0.69341
Target:  5'- cGGGcgGCUGCgGG-GCGGCCGcgauuccucUCGCc -3'
miRNA:   3'- aCCUuuUGACGgCUgCGCUGGU---------AGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.