Results 1 - 20 of 23 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33169 | 3' | -54.3 | NC_007497.1 | + | 36624 | 1.1 | 0.000723 |
Target: 5'- cUUGGGCAUCGCUGUCGCCGAAUUCGCg -3' miRNA: 3'- -AACCCGUAGCGACAGCGGCUUAAGCG- -5' |
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33169 | 3' | -54.3 | NC_007497.1 | + | 25903 | 0.74 | 0.270401 |
Target: 5'- -cGGacaGCGUUGCgGUCGCCGAAUUCa- -3' miRNA: 3'- aaCC---CGUAGCGaCAGCGGCUUAAGcg -5' |
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33169 | 3' | -54.3 | NC_007497.1 | + | 39187 | 0.72 | 0.332029 |
Target: 5'- -gGGGCGUCGUUGaCGCCccuUUCGUu -3' miRNA: 3'- aaCCCGUAGCGACaGCGGcuuAAGCG- -5' |
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33169 | 3' | -54.3 | NC_007497.1 | + | 27218 | 0.71 | 0.403374 |
Target: 5'- -gGGGCAggugaUCGCUaUUGCCGAuccgCGCa -3' miRNA: 3'- aaCCCGU-----AGCGAcAGCGGCUuaa-GCG- -5' |
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33169 | 3' | -54.3 | NC_007497.1 | + | 17831 | 0.71 | 0.403374 |
Target: 5'- -gGaGGCA-CGUc-UCGCCGAAUUCGCg -3' miRNA: 3'- aaC-CCGUaGCGacAGCGGCUUAAGCG- -5' |
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33169 | 3' | -54.3 | NC_007497.1 | + | 8230 | 0.7 | 0.442502 |
Target: 5'- cUGGGCcUUGaUGUCGCUGAGaagCGCg -3' miRNA: 3'- aACCCGuAGCgACAGCGGCUUaa-GCG- -5' |
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33169 | 3' | -54.3 | NC_007497.1 | + | 41527 | 0.69 | 0.483685 |
Target: 5'- -aGGGCG-CGCUGUUGCgCGGca-CGCu -3' miRNA: 3'- aaCCCGUaGCGACAGCG-GCUuaaGCG- -5' |
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33169 | 3' | -54.3 | NC_007497.1 | + | 15456 | 0.69 | 0.494269 |
Target: 5'- -aGGGaagCGCUGUCGC---AUUCGCg -3' miRNA: 3'- aaCCCguaGCGACAGCGgcuUAAGCG- -5' |
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33169 | 3' | -54.3 | NC_007497.1 | + | 32247 | 0.69 | 0.523348 |
Target: 5'- -aGGGCggaacggccgacgcGUCGCagaugaUGgcgagCGCCGAGUUUGCg -3' miRNA: 3'- aaCCCG--------------UAGCG------ACa----GCGGCUUAAGCG- -5' |
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33169 | 3' | -54.3 | NC_007497.1 | + | 34765 | 0.69 | 0.526621 |
Target: 5'- -aGGGUcUCGCgGcCGCCGAg--CGCg -3' miRNA: 3'- aaCCCGuAGCGaCaGCGGCUuaaGCG- -5' |
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33169 | 3' | -54.3 | NC_007497.1 | + | 30298 | 0.68 | 0.556395 |
Target: 5'- -cGGGCGUgcaggucgaguucaCGCUGUCGUCGc---CGCu -3' miRNA: 3'- aaCCCGUA--------------GCGACAGCGGCuuaaGCG- -5' |
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33169 | 3' | -54.3 | NC_007497.1 | + | 32459 | 0.68 | 0.570907 |
Target: 5'- ---uGCAUgGCUGUCGaacgaCGAGUUCGUc -3' miRNA: 3'- aaccCGUAgCGACAGCg----GCUUAAGCG- -5' |
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33169 | 3' | -54.3 | NC_007497.1 | + | 37544 | 0.68 | 0.582132 |
Target: 5'- --cGGUGUCGCUcgaauaGUCGUCGggUaagUCGCu -3' miRNA: 3'- aacCCGUAGCGA------CAGCGGCuuA---AGCG- -5' |
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33169 | 3' | -54.3 | NC_007497.1 | + | 23223 | 0.67 | 0.593402 |
Target: 5'- -aGGGCGUCGCcgGcUGCCGGGcUUCcgGCg -3' miRNA: 3'- aaCCCGUAGCGa-CaGCGGCUU-AAG--CG- -5' |
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33169 | 3' | -54.3 | NC_007497.1 | + | 22936 | 0.67 | 0.593402 |
Target: 5'- -aGGGC--CGCUGUCGUCGccgcccCGCa -3' miRNA: 3'- aaCCCGuaGCGACAGCGGCuuaa--GCG- -5' |
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33169 | 3' | -54.3 | NC_007497.1 | + | 38104 | 0.67 | 0.648938 |
Target: 5'- -cGGGUAUCGCaacCGCCGGuguccguGUUCGg -3' miRNA: 3'- aaCCCGUAGCGacaGCGGCU-------UAAGCg -5' |
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33169 | 3' | -54.3 | NC_007497.1 | + | 28936 | 0.67 | 0.650071 |
Target: 5'- -gGGGCAgcacUgGCcGUCGUCGGcUUCGUg -3' miRNA: 3'- aaCCCGU----AgCGaCAGCGGCUuAAGCG- -5' |
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33169 | 3' | -54.3 | NC_007497.1 | + | 28365 | 0.66 | 0.672692 |
Target: 5'- gUUGGGauccCGCUGaCGUCGGAUgCGCc -3' miRNA: 3'- -AACCCgua-GCGACaGCGGCUUAaGCG- -5' |
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33169 | 3' | -54.3 | NC_007497.1 | + | 23571 | 0.66 | 0.672692 |
Target: 5'- cUGGGCGcgGCggcgGgCGCCGGcgUCGUg -3' miRNA: 3'- aACCCGUagCGa---CaGCGGCUuaAGCG- -5' |
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33169 | 3' | -54.3 | NC_007497.1 | + | 32854 | 0.66 | 0.672692 |
Target: 5'- -cGGGCGcUCGCUcuguaucaggaGUcCGCCGAGaaCGCc -3' miRNA: 3'- aaCCCGU-AGCGA-----------CA-GCGGCUUaaGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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