miRNA display CGI


Results 1 - 20 of 22 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33170 3' -56.3 NC_007497.1 + 44260 0.66 0.624781
Target:  5'- --cGGGACAUGCCGuuguccacuccaucACUcgaccuucuUGCCGCCg -3'
miRNA:   3'- agaCCUUGUACGGCc-------------UGA---------ACGGCGGg -5'
33170 3' -56.3 NC_007497.1 + 42575 0.66 0.620342
Target:  5'- cCUGGcGGCcUGCCGuGGCgaGCCGUgCu -3'
miRNA:   3'- aGACC-UUGuACGGC-CUGaaCGGCGgG- -5'
33170 3' -56.3 NC_007497.1 + 5430 0.66 0.620342
Target:  5'- --cGG-ACAUGCCGGAUgugGCgGCg- -3'
miRNA:   3'- agaCCuUGUACGGCCUGaa-CGgCGgg -5'
33170 3' -56.3 NC_007497.1 + 17884 0.66 0.620342
Target:  5'- aCUGGAAguUGUU--GCccGCCGCCCg -3'
miRNA:   3'- aGACCUUguACGGccUGaaCGGCGGG- -5'
33170 3' -56.3 NC_007497.1 + 30348 0.66 0.609254
Target:  5'- --cGGGA-AUGCCGGGCc-GCCGUCg -3'
miRNA:   3'- agaCCUUgUACGGCCUGaaCGGCGGg -5'
33170 3' -56.3 NC_007497.1 + 11256 0.66 0.609254
Target:  5'- aCUGGAagucGCAgguaacguUGCaCGGGCgcgUGCUGCUg -3'
miRNA:   3'- aGACCU----UGU--------ACG-GCCUGa--ACGGCGGg -5'
33170 3' -56.3 NC_007497.1 + 7551 0.66 0.609254
Target:  5'- --aGGAAUAcgaGCUGGGCcUGCCGgauCCCg -3'
miRNA:   3'- agaCCUUGUa--CGGCCUGaACGGC---GGG- -5'
33170 3' -56.3 NC_007497.1 + 27770 0.66 0.598186
Target:  5'- --cGGGAuuguucgucCAUGCCGGuuugaACgUGCCGUCCc -3'
miRNA:   3'- agaCCUU---------GUACGGCC-----UGaACGGCGGG- -5'
33170 3' -56.3 NC_007497.1 + 12278 0.66 0.598186
Target:  5'- aCUGGcgGGCGgccUGUCGGAUggcgucgcgGCCGCCg -3'
miRNA:   3'- aGACC--UUGU---ACGGCCUGaa-------CGGCGGg -5'
33170 3' -56.3 NC_007497.1 + 38533 0.66 0.576148
Target:  5'- gCUGGcgccacggcucGGCAUGUCGGGCgcgaUGCUGCg- -3'
miRNA:   3'- aGACC-----------UUGUACGGCCUGa---ACGGCGgg -5'
33170 3' -56.3 NC_007497.1 + 20235 0.67 0.536994
Target:  5'- --gGGAACcgGCUGGGCaguuaucggacggccUUcGCCGCCg -3'
miRNA:   3'- agaCCUUGuaCGGCCUG---------------AA-CGGCGGg -5'
33170 3' -56.3 NC_007497.1 + 21163 0.67 0.532696
Target:  5'- -gUGGGuCAcgGCCGGcgGCcgcgUGCUGCCCg -3'
miRNA:   3'- agACCUuGUa-CGGCC--UGa---ACGGCGGG- -5'
33170 3' -56.3 NC_007497.1 + 37836 0.67 0.526274
Target:  5'- cCUGGuccuguggcugauCcgGCCGGcACUcgaUGUCGCCCu -3'
miRNA:   3'- aGACCuu-----------GuaCGGCC-UGA---ACGGCGGG- -5'
33170 3' -56.3 NC_007497.1 + 30182 0.68 0.459857
Target:  5'- aUCUGG--CGUGCgGGAaccUGCUGUCCg -3'
miRNA:   3'- -AGACCuuGUACGgCCUga-ACGGCGGG- -5'
33170 3' -56.3 NC_007497.1 + 30250 0.69 0.411199
Target:  5'- --cGGAgcgACAUGCCGGGCagcgggaUGCUGCUg -3'
miRNA:   3'- agaCCU---UGUACGGCCUGa------ACGGCGGg -5'
33170 3' -56.3 NC_007497.1 + 27107 0.69 0.411199
Target:  5'- --cGGAGCGgauacgGCCGccGAUgcGCCGCCCc -3'
miRNA:   3'- agaCCUUGUa-----CGGC--CUGaaCGGCGGG- -5'
33170 3' -56.3 NC_007497.1 + 36160 0.7 0.357221
Target:  5'- --cGGaAGCggGCgGGGCgcgucgGCCGCCCg -3'
miRNA:   3'- agaCC-UUGuaCGgCCUGaa----CGGCGGG- -5'
33170 3' -56.3 NC_007497.1 + 9583 0.72 0.271759
Target:  5'- aCUGGAACAcgaaacgGuuGGcACUUGCCGCg- -3'
miRNA:   3'- aGACCUUGUa------CggCC-UGAACGGCGgg -5'
33170 3' -56.3 NC_007497.1 + 18464 0.72 0.264862
Target:  5'- aUCUGGuACA-GCCGGACgccgaGCCGCg- -3'
miRNA:   3'- -AGACCuUGUaCGGCCUGaa---CGGCGgg -5'
33170 3' -56.3 NC_007497.1 + 44332 0.75 0.168251
Target:  5'- --cGGAGCAaaCCGG-CUUGCCGCCUu -3'
miRNA:   3'- agaCCUUGUacGGCCuGAACGGCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.