Results 1 - 19 of 19 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33171 | 3' | -58.9 | NC_007497.1 | + | 23698 | 0.66 | 0.472985 |
Target: 5'- cGCaCACCgUGAUUGAUaGCCCG-GUGAUg -3' miRNA: 3'- -UG-GUGG-ACUAGCUAgCGGGCgCGCUA- -5' |
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33171 | 3' | -58.9 | NC_007497.1 | + | 486 | 0.66 | 0.443316 |
Target: 5'- cACCGCCgcGGUUGAUCGCCaaCG-GCGGc -3' miRNA: 3'- -UGGUGGa-CUAGCUAGCGG--GCgCGCUa -5' |
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33171 | 3' | -58.9 | NC_007497.1 | + | 29204 | 0.66 | 0.440407 |
Target: 5'- cACCACCUGcAUcgccagaaaaagggCGAUCGCcacugCCGCGcCGAUc -3' miRNA: 3'- -UGGUGGAC-UA--------------GCUAGCG-----GGCGC-GCUA- -5' |
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33171 | 3' | -58.9 | NC_007497.1 | + | 35130 | 0.66 | 0.453091 |
Target: 5'- aGCCGCaucg-CGAUCGCuCCGCGCc-- -3' miRNA: 3'- -UGGUGgacuaGCUAGCG-GGCGCGcua -5' |
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33171 | 3' | -58.9 | NC_007497.1 | + | 21315 | 0.67 | 0.378418 |
Target: 5'- -gCACCUGAUCa---GCgCGCGCGAg -3' miRNA: 3'- ugGUGGACUAGcuagCGgGCGCGCUa -5' |
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33171 | 3' | -58.9 | NC_007497.1 | + | 33329 | 0.67 | 0.405448 |
Target: 5'- cGCCACCgccUCGAcgCGCagCUGCGCGAUc -3' miRNA: 3'- -UGGUGGacuAGCUa-GCG--GGCGCGCUA- -5' |
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33171 | 3' | -58.9 | NC_007497.1 | + | 33174 | 0.67 | 0.405448 |
Target: 5'- aGCUGCacgGcgCGAUCGUaggCCGCGCGAa -3' miRNA: 3'- -UGGUGga-CuaGCUAGCG---GGCGCGCUa -5' |
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33171 | 3' | -58.9 | NC_007497.1 | + | 24923 | 0.67 | 0.396303 |
Target: 5'- gACCGCCUGGcCGAccaUCGCCUGCa---- -3' miRNA: 3'- -UGGUGGACUaGCU---AGCGGGCGcgcua -5' |
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33171 | 3' | -58.9 | NC_007497.1 | + | 23929 | 0.68 | 0.335325 |
Target: 5'- gGCCGugaugauCCcGAUCgGGUCGgCCGCGCGAc -3' miRNA: 3'- -UGGU-------GGaCUAG-CUAGCgGGCGCGCUa -5' |
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33171 | 3' | -58.9 | NC_007497.1 | + | 22910 | 0.68 | 0.352626 |
Target: 5'- aACCAgCUUGGUCGAaCGaCCCGCcuagGCGAg -3' miRNA: 3'- -UGGU-GGACUAGCUaGC-GGGCG----CGCUa -5' |
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33171 | 3' | -58.9 | NC_007497.1 | + | 6633 | 0.68 | 0.328103 |
Target: 5'- gGCgCGCCa---CGGUCGCCgGCGCGAa -3' miRNA: 3'- -UG-GUGGacuaGCUAGCGGgCGCGCUa -5' |
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33171 | 3' | -58.9 | NC_007497.1 | + | 34738 | 0.68 | 0.328103 |
Target: 5'- cGCCGCCgcguagcgcgucUGAUCGAUCGUucccuuggCCGCgGCGGc -3' miRNA: 3'- -UGGUGG------------ACUAGCUAGCG--------GGCG-CGCUa -5' |
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33171 | 3' | -58.9 | NC_007497.1 | + | 34396 | 0.69 | 0.312468 |
Target: 5'- gAUgACCUGAUCGAgcggCGCCUGCauguCGAUc -3' miRNA: 3'- -UGgUGGACUAGCUa---GCGGGCGc---GCUA- -5' |
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33171 | 3' | -58.9 | NC_007497.1 | + | 14374 | 0.7 | 0.249132 |
Target: 5'- gUCACCUGAUCaaccgCGCCCGCccuGCGGg -3' miRNA: 3'- uGGUGGACUAGcua--GCGGGCG---CGCUa -5' |
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33171 | 3' | -58.9 | NC_007497.1 | + | 36558 | 0.71 | 0.230509 |
Target: 5'- gGCCGCC-GAgcUCGAUCGCCUuCGUGAc -3' miRNA: 3'- -UGGUGGaCU--AGCUAGCGGGcGCGCUa -5' |
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33171 | 3' | -58.9 | NC_007497.1 | + | 11051 | 0.73 | 0.167448 |
Target: 5'- gAUCACCgGAUU--UCGCCUGCGCGAa -3' miRNA: 3'- -UGGUGGaCUAGcuAGCGGGCGCGCUa -5' |
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33171 | 3' | -58.9 | NC_007497.1 | + | 17487 | 0.74 | 0.138225 |
Target: 5'- aGCCAUgcgcuugaUGAUCGAgacgcCGCCCGCGCGGa -3' miRNA: 3'- -UGGUGg-------ACUAGCUa----GCGGGCGCGCUa -5' |
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33171 | 3' | -58.9 | NC_007497.1 | + | 1806 | 0.76 | 0.104552 |
Target: 5'- uGCCGCUUGA-CGGUCGgaaUCCGCGCGAUc -3' miRNA: 3'- -UGGUGGACUaGCUAGC---GGGCGCGCUA- -5' |
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33171 | 3' | -58.9 | NC_007497.1 | + | 37859 | 1.05 | 0.000676 |
Target: 5'- gACCACCUGAUCGAUCGCCCGCGCGAUc -3' miRNA: 3'- -UGGUGGACUAGCUAGCGGGCGCGCUA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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