Results 1 - 13 of 13 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33171 | 5' | -56.5 | NC_007497.1 | + | 37916 | 0.66 | 0.546988 |
Target: 5'- uGAAgUGCGCgUCUCGGUuuccgggcgccaUUGGGUGAUCu -3' miRNA: 3'- -CUUaACGCG-GGAGCCG------------GACUCGCUAG- -5' |
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33171 | 5' | -56.5 | NC_007497.1 | + | 29083 | 0.66 | 0.580084 |
Target: 5'- ----aGUGCCCgcaCGGCCUcGGCuGUCg -3' miRNA: 3'- cuuaaCGCGGGa--GCCGGAcUCGcUAG- -5' |
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33171 | 5' | -56.5 | NC_007497.1 | + | 5688 | 0.66 | 0.557961 |
Target: 5'- cGGAUUGCGUUCauugccauuagUCGGuCCUcAGUGAUCg -3' miRNA: 3'- -CUUAACGCGGG-----------AGCC-GGAcUCGCUAG- -5' |
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33171 | 5' | -56.5 | NC_007497.1 | + | 3025 | 0.66 | 0.557961 |
Target: 5'- aGAAUUGcCGCCUUCGaaaccgucGCCaucUGAGCG-UCg -3' miRNA: 3'- -CUUAAC-GCGGGAGC--------CGG---ACUCGCuAG- -5' |
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33171 | 5' | -56.5 | NC_007497.1 | + | 23431 | 0.66 | 0.536084 |
Target: 5'- -----cCGCCUUCgccugGGCCUGAGCGGc- -3' miRNA: 3'- cuuaacGCGGGAG-----CCGGACUCGCUag -5' |
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33171 | 5' | -56.5 | NC_007497.1 | + | 25967 | 0.67 | 0.514513 |
Target: 5'- ---aUGuCGCCCUCGGCaaucgccgaCUGcAGCGAc- -3' miRNA: 3'- cuuaAC-GCGGGAGCCG---------GAC-UCGCUag -5' |
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33171 | 5' | -56.5 | NC_007497.1 | + | 34665 | 0.67 | 0.514513 |
Target: 5'- ----cGCGCUCgCGcGCCUGcgucGCGAUCg -3' miRNA: 3'- cuuaaCGCGGGaGC-CGGACu---CGCUAG- -5' |
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33171 | 5' | -56.5 | NC_007497.1 | + | 43994 | 0.67 | 0.493305 |
Target: 5'- ----gGCGCCgUCGGCgUGAuCGAUg -3' miRNA: 3'- cuuaaCGCGGgAGCCGgACUcGCUAg -5' |
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33171 | 5' | -56.5 | NC_007497.1 | + | 36577 | 0.67 | 0.514513 |
Target: 5'- ------gGCCCagcgaGGCCUGAGCGAagUCg -3' miRNA: 3'- cuuaacgCGGGag---CCGGACUCGCU--AG- -5' |
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33171 | 5' | -56.5 | NC_007497.1 | + | 31810 | 0.68 | 0.412959 |
Target: 5'- cGAAUcGC-CCCUgCGGCCgGAGCGGc- -3' miRNA: 3'- -CUUAaCGcGGGA-GCCGGaCUCGCUag -5' |
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33171 | 5' | -56.5 | NC_007497.1 | + | 17735 | 0.68 | 0.4323 |
Target: 5'- ----gGCGCCCgcagUGGCgCcGGGUGAUCg -3' miRNA: 3'- cuuaaCGCGGGa---GCCG-GaCUCGCUAG- -5' |
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33171 | 5' | -56.5 | NC_007497.1 | + | 44483 | 0.69 | 0.367026 |
Target: 5'- --cUUGCGUgaUCUCGGCauggCUGGGUGGUCg -3' miRNA: 3'- cuuAACGCG--GGAGCCG----GACUCGCUAG- -5' |
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33171 | 5' | -56.5 | NC_007497.1 | + | 37893 | 1.1 | 0.000399 |
Target: 5'- cGAAUUGCGCCCUCGGCCUGAGCGAUCg -3' miRNA: 3'- -CUUAACGCGGGAGCCGGACUCGCUAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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