Results 1 - 18 of 18 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33172 | 3' | -55 | NC_007497.1 | + | 21693 | 0.65 | 0.701874 |
Target: 5'- --cGCCGCUGAucgcuggaaaCGcAGCGGAacaaucggccucaUGCUCGu -3' miRNA: 3'- gaaCGGUGACU----------GCuUCGCCU-------------GCGAGC- -5' |
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33172 | 3' | -55 | NC_007497.1 | + | 7931 | 0.66 | 0.691986 |
Target: 5'- -gUGCCgGCUGA-GAAGCGGGuauuUGCaUCGg -3' miRNA: 3'- gaACGG-UGACUgCUUCGCCU----GCG-AGC- -5' |
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33172 | 3' | -55 | NC_007497.1 | + | 2826 | 0.66 | 0.691986 |
Target: 5'- --gGCCAUccGACGGAGuCGGccauucugcguGCGCUCa -3' miRNA: 3'- gaaCGGUGa-CUGCUUC-GCC-----------UGCGAGc -5' |
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33172 | 3' | -55 | NC_007497.1 | + | 31474 | 0.66 | 0.680944 |
Target: 5'- gUUGCCACgcaagguaacGACGGcacacAGaucaGGGCGCUCa -3' miRNA: 3'- gAACGGUGa---------CUGCU-----UCg---CCUGCGAGc -5' |
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33172 | 3' | -55 | NC_007497.1 | + | 17243 | 0.67 | 0.636406 |
Target: 5'- --gGCCggGCUGACGGacgagcAGCGcagcACGCUCGa -3' miRNA: 3'- gaaCGG--UGACUGCU------UCGCc---UGCGAGC- -5' |
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33172 | 3' | -55 | NC_007497.1 | + | 44295 | 0.68 | 0.580711 |
Target: 5'- uCUUGCCGCcguUGGCGAucaaccgcGGCGGugcCGC-CGg -3' miRNA: 3'- -GAACGGUG---ACUGCU--------UCGCCu--GCGaGC- -5' |
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33172 | 3' | -55 | NC_007497.1 | + | 26881 | 0.68 | 0.547745 |
Target: 5'- -cUGCaCGCUGACGAcGCGGuACaGCUgCGc -3' miRNA: 3'- gaACG-GUGACUGCUuCGCC-UG-CGA-GC- -5' |
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33172 | 3' | -55 | NC_007497.1 | + | 38211 | 0.68 | 0.581818 |
Target: 5'- --cGCCgGCgcgaacgugauccggGACGAGGCGcGCGCUCGc -3' miRNA: 3'- gaaCGG-UGa--------------CUGCUUCGCcUGCGAGC- -5' |
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33172 | 3' | -55 | NC_007497.1 | + | 27202 | 0.68 | 0.569668 |
Target: 5'- aUUGCCgauccGCgcaaGGCGggGCGG-CGCaUCGg -3' miRNA: 3'- gAACGG-----UGa---CUGCuuCGCCuGCG-AGC- -5' |
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33172 | 3' | -55 | NC_007497.1 | + | 32878 | 0.68 | 0.526096 |
Target: 5'- --cGCgAUUGGCGuguuggcgcGAGcCGGGCGCUCGc -3' miRNA: 3'- gaaCGgUGACUGC---------UUC-GCCUGCGAGC- -5' |
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33172 | 3' | -55 | NC_007497.1 | + | 34275 | 0.68 | 0.526096 |
Target: 5'- --cGUCACUGACGAggaucaGGCGG-CaCUCGa -3' miRNA: 3'- gaaCGGUGACUGCU------UCGCCuGcGAGC- -5' |
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33172 | 3' | -55 | NC_007497.1 | + | 23576 | 0.69 | 0.515392 |
Target: 5'- --cGCUGCUGggcGCGGcGGCGGGCGC-CGg -3' miRNA: 3'- gaaCGGUGAC---UGCU-UCGCCUGCGaGC- -5' |
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33172 | 3' | -55 | NC_007497.1 | + | 6630 | 0.7 | 0.41415 |
Target: 5'- gUUGgaAUUGACGAGGCGGugGCg-- -3' miRNA: 3'- gAACggUGACUGCUUCGCCugCGagc -5' |
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33172 | 3' | -55 | NC_007497.1 | + | 17218 | 0.7 | 0.41415 |
Target: 5'- --aGCCGCccGCGcAGGCaGACGCUCGg -3' miRNA: 3'- gaaCGGUGacUGC-UUCGcCUGCGAGC- -5' |
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33172 | 3' | -55 | NC_007497.1 | + | 13614 | 0.71 | 0.377201 |
Target: 5'- --gGCCACUGAgGAagAGCGGGcCGC-CGc -3' miRNA: 3'- gaaCGGUGACUgCU--UCGCCU-GCGaGC- -5' |
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33172 | 3' | -55 | NC_007497.1 | + | 15240 | 0.72 | 0.334239 |
Target: 5'- --cGCCugUGGCGcaucccGCGGACGC-CGg -3' miRNA: 3'- gaaCGGugACUGCuu----CGCCUGCGaGC- -5' |
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33172 | 3' | -55 | NC_007497.1 | + | 29694 | 0.74 | 0.252706 |
Target: 5'- -gUGUCGCUcGGCGuucAGGCGGACgGCUCGa -3' miRNA: 3'- gaACGGUGA-CUGC---UUCGCCUG-CGAGC- -5' |
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33172 | 3' | -55 | NC_007497.1 | + | 38446 | 1.08 | 0.000965 |
Target: 5'- cCUUGCCACUGACGAAGCGGACGCUCGc -3' miRNA: 3'- -GAACGGUGACUGCUUCGCCUGCGAGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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