Results 1 - 6 of 6 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33172 | 5' | -57.4 | NC_007497.1 | + | 38482 | 1.09 | 0.000495 |
Target: 5'- cGUCGUGCGUCACCCAGUCAUCGGGCAa -3' miRNA: 3'- -CAGCACGCAGUGGGUCAGUAGCCCGU- -5' |
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33172 | 5' | -57.4 | NC_007497.1 | + | 5089 | 0.78 | 0.095333 |
Target: 5'- uUCGUGaga-ACCCAGUCGUCGGGUAa -3' miRNA: 3'- cAGCACgcagUGGGUCAGUAGCCCGU- -5' |
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33172 | 5' | -57.4 | NC_007497.1 | + | 37543 | 0.71 | 0.283011 |
Target: 5'- -cCG-GUGUCGCUCgaauAGUCGUCGGGUAa -3' miRNA: 3'- caGCaCGCAGUGGG----UCAGUAGCCCGU- -5' |
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33172 | 5' | -57.4 | NC_007497.1 | + | 4274 | 0.69 | 0.353276 |
Target: 5'- -gUGUGCGUCGCCgauCAG-CA-CGGGCGg -3' miRNA: 3'- caGCACGCAGUGG---GUCaGUaGCCCGU- -5' |
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33172 | 5' | -57.4 | NC_007497.1 | + | 29762 | 0.69 | 0.370475 |
Target: 5'- uUCG-GCGUcCGCgUAGUCuUCGGGCGc -3' miRNA: 3'- cAGCaCGCA-GUGgGUCAGuAGCCCGU- -5' |
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33172 | 5' | -57.4 | NC_007497.1 | + | 10966 | 0.67 | 0.444753 |
Target: 5'- aUCGagaGCGaCACCgAGUCAUCGaGGCc -3' miRNA: 3'- cAGCa--CGCaGUGGgUCAGUAGC-CCGu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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