Results 1 - 13 of 13 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33173 | 3' | -51.3 | NC_007497.1 | + | 17262 | 0.66 | 0.867947 |
Target: 5'- uGcgGGGCG--GCC--GCGAUUCCUCUc -3' miRNA: 3'- -CuaCUCGCagCGGuaUGCUAAGGAGG- -5' |
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33173 | 3' | -51.3 | NC_007497.1 | + | 35582 | 0.66 | 0.876128 |
Target: 5'- --cGAucGCGUCgGCCAcgccggGCaAUUCCUCCa -3' miRNA: 3'- cuaCU--CGCAG-CGGUa-----UGcUAAGGAGG- -5' |
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33173 | 3' | -51.3 | NC_007497.1 | + | 2522 | 0.67 | 0.813616 |
Target: 5'- uGAUGGcGCGUCGCCGcGCGAacgCC-Ca -3' miRNA: 3'- -CUACU-CGCAGCGGUaUGCUaa-GGaGg -5' |
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33173 | 3' | -51.3 | NC_007497.1 | + | 31325 | 0.67 | 0.803778 |
Target: 5'- cGGUGGGCGUguccUGCUggGCGGcgCUUCCg -3' miRNA: 3'- -CUACUCGCA----GCGGuaUGCUaaGGAGG- -5' |
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33173 | 3' | -51.3 | NC_007497.1 | + | 17746 | 0.68 | 0.793746 |
Target: 5'- cGAUGAGCucgCGCCGUACucuAUguugUCUCCu -3' miRNA: 3'- -CUACUCGca-GCGGUAUGc--UAa---GGAGG- -5' |
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33173 | 3' | -51.3 | NC_007497.1 | + | 33040 | 0.68 | 0.783531 |
Target: 5'- cGAUGAGUuccGUCGCCGacgugACGAUUUCa-- -3' miRNA: 3'- -CUACUCG---CAGCGGUa----UGCUAAGGagg -5' |
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33173 | 3' | -51.3 | NC_007497.1 | + | 14111 | 0.68 | 0.772099 |
Target: 5'- cGUGAGCGUgGCgAUGuCGAUgggggucaugucuUUCUCCu -3' miRNA: 3'- cUACUCGCAgCGgUAU-GCUA-------------AGGAGG- -5' |
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33173 | 3' | -51.3 | NC_007497.1 | + | 17779 | 0.69 | 0.71912 |
Target: 5'- --aGAGcCGUCGUCGUgaaggGCGAUUCCgUCg -3' miRNA: 3'- cuaCUC-GCAGCGGUA-----UGCUAAGG-AGg -5' |
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33173 | 3' | -51.3 | NC_007497.1 | + | 3094 | 0.69 | 0.707984 |
Target: 5'- --aGcGCGUCGCCGU-CGAaUCC-CCa -3' miRNA: 3'- cuaCuCGCAGCGGUAuGCUaAGGaGG- -5' |
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33173 | 3' | -51.3 | NC_007497.1 | + | 26016 | 0.7 | 0.674145 |
Target: 5'- uGGUG-GCGUCGCCc-GCGuacUCUUCCg -3' miRNA: 3'- -CUACuCGCAGCGGuaUGCua-AGGAGG- -5' |
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33173 | 3' | -51.3 | NC_007497.1 | + | 35519 | 0.7 | 0.639918 |
Target: 5'- cGGUGAGC-UUGCCGUccucgGCGAgcgCCUUCa -3' miRNA: 3'- -CUACUCGcAGCGGUA-----UGCUaa-GGAGG- -5' |
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33173 | 3' | -51.3 | NC_007497.1 | + | 23223 | 0.7 | 0.639918 |
Target: 5'- --aGGGCGUCGCCGgcUGCcGggCUUCCg -3' miRNA: 3'- cuaCUCGCAGCGGU--AUGcUaaGGAGG- -5' |
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33173 | 3' | -51.3 | NC_007497.1 | + | 39083 | 1.12 | 0.001274 |
Target: 5'- uGAUGAGCGUCGCCAUACGAUUCCUCCu -3' miRNA: 3'- -CUACUCGCAGCGGUAUGCUAAGGAGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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