Results 1 - 14 of 14 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33173 | 5' | -57.6 | NC_007497.1 | + | 8618 | 0.69 | 0.383909 |
Target: 5'- cACGAcc-GGGCGgcCGACG-CGCCCCg -3' miRNA: 3'- -UGCUuucCCCGCa-GUUGCuGCGGGGa -5' |
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33173 | 5' | -57.6 | NC_007497.1 | + | 8699 | 0.67 | 0.469302 |
Target: 5'- aGCGGAAGcGGGCGgggcgCGuCGGcCGCCCg- -3' miRNA: 3'- -UGCUUUC-CCCGCa----GUuGCU-GCGGGga -5' |
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33173 | 5' | -57.6 | NC_007497.1 | + | 17066 | 0.79 | 0.077671 |
Target: 5'- gGCGGAAGGGGCGgaacCGAUGGCGaUCCCg -3' miRNA: 3'- -UGCUUUCCCCGCa---GUUGCUGC-GGGGa -5' |
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33173 | 5' | -57.6 | NC_007497.1 | + | 21163 | 0.69 | 0.375074 |
Target: 5'- cCGAAAGGaaagaGCGUCGuACGGCGCCUg- -3' miRNA: 3'- uGCUUUCCc----CGCAGU-UGCUGCGGGga -5' |
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33173 | 5' | -57.6 | NC_007497.1 | + | 21465 | 0.67 | 0.49987 |
Target: 5'- cUGAAAGcaGGGCGUCcgUGACGCgCUg -3' miRNA: 3'- uGCUUUC--CCCGCAGuuGCUGCGgGGa -5' |
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33173 | 5' | -57.6 | NC_007497.1 | + | 23003 | 0.68 | 0.439718 |
Target: 5'- ----cGGGGGCGgCGACGACagcgGCCCUg -3' miRNA: 3'- ugcuuUCCCCGCaGUUGCUG----CGGGGa -5' |
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33173 | 5' | -57.6 | NC_007497.1 | + | 23294 | 0.67 | 0.479388 |
Target: 5'- cCGGAAGcccGGCaGcCGGCGACGCCCUc -3' miRNA: 3'- uGCUUUCc--CCG-CaGUUGCUGCGGGGa -5' |
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33173 | 5' | -57.6 | NC_007497.1 | + | 27691 | 0.66 | 0.541922 |
Target: 5'- gACGGAaaAGGcGGCGUCGagccGCGAuuCGCCUg- -3' miRNA: 3'- -UGCUU--UCC-CCGCAGU----UGCU--GCGGGga -5' |
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33173 | 5' | -57.6 | NC_007497.1 | + | 33871 | 0.67 | 0.479388 |
Target: 5'- gACGAAGGGGGCGaacgCAGcCGAgGCgCg- -3' miRNA: 3'- -UGCUUUCCCCGCa---GUU-GCUgCGgGga -5' |
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33173 | 5' | -57.6 | NC_007497.1 | + | 36695 | 0.68 | 0.39288 |
Target: 5'- cGCGAAuucGGCGaCAGCGAUGCCCa- -3' miRNA: 3'- -UGCUUuccCCGCaGUUGCUGCGGGga -5' |
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33173 | 5' | -57.6 | NC_007497.1 | + | 39118 | 1.06 | 0.000725 |
Target: 5'- aACGAAAGGGGCGUCAACGACGCCCCUc -3' miRNA: 3'- -UGCUUUCCCCGCAGUUGCUGCGGGGA- -5' |
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33173 | 5' | -57.6 | NC_007497.1 | + | 39203 | 0.86 | 0.022164 |
Target: 5'- cGCGAuugugguuuGAGGGGCGUCGuUGACGCCCCUu -3' miRNA: 3'- -UGCU---------UUCCCCGCAGUuGCUGCGGGGA- -5' |
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33173 | 5' | -57.6 | NC_007497.1 | + | 40894 | 0.68 | 0.411227 |
Target: 5'- cACGAcauGGcGGCcgcugCAGCGACGCUCCg -3' miRNA: 3'- -UGCUuu-CC-CCGca---GUUGCUGCGGGGa -5' |
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33173 | 5' | -57.6 | NC_007497.1 | + | 42896 | 0.67 | 0.493683 |
Target: 5'- gACGGAAcgccgcaucgcGGcGGCGUCGgggcagcgaucgaagGCGACgaaGCCCCUg -3' miRNA: 3'- -UGCUUU-----------CC-CCGCAGU---------------UGCUG---CGGGGA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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