miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33175 3' -55.2 NC_007497.1 + 17774 0.66 0.653149
Target:  5'- cGAGACGUGCC-UC-CCCGugaaauggguacuUCAGGGa -3'
miRNA:   3'- uCUUUGCGCGGcAGuGGGU-------------AGUCCUa -5'
33175 3' -55.2 NC_007497.1 + 8687 0.67 0.584458
Target:  5'- cGggGCGCGUCGgcCGCCCGgucguguggcugCGGGGa -3'
miRNA:   3'- uCuuUGCGCGGCa-GUGGGUa-----------GUCCUa -5'
33175 3' -55.2 NC_007497.1 + 28993 0.68 0.531372
Target:  5'- cGAAuCGCGCCGgugaUCAUCGGGAg -3'
miRNA:   3'- uCUUuGCGCGGCagugGGUAGUCCUa -5'
33175 3' -55.2 NC_007497.1 + 24261 0.68 0.531372
Target:  5'- --cGugGCGUCGUCGCUgacgcugacggaCAUCGGGGUg -3'
miRNA:   3'- ucuUugCGCGGCAGUGG------------GUAGUCCUA- -5'
33175 3' -55.2 NC_007497.1 + 16670 0.68 0.499082
Target:  5'- cGGGAGCGCGCCGcUCgcgugACCgCGUCgcguAGGAa -3'
miRNA:   3'- -UCUUUGCGCGGC-AG-----UGG-GUAG----UCCUa -5'
33175 3' -55.2 NC_007497.1 + 6721 0.68 0.488512
Target:  5'- uAGAAACGCGCCGggcagGCCUucgaAGGAg -3'
miRNA:   3'- -UCUUUGCGCGGCag---UGGGuag-UCCUa -5'
33175 3' -55.2 NC_007497.1 + 33027 0.69 0.427495
Target:  5'- ---cGCGCGuuGUCGCCCAUCGa--- -3'
miRNA:   3'- ucuuUGCGCggCAGUGGGUAGUccua -5'
33175 3' -55.2 NC_007497.1 + 40383 0.69 0.427495
Target:  5'- cGGAACaGCGCCaaccggGCCCGUCAGGGc -3'
miRNA:   3'- uCUUUG-CGCGGcag---UGGGUAGUCCUa -5'
33175 3' -55.2 NC_007497.1 + 5444 0.7 0.398724
Target:  5'- -cGAGCGCGCCGgacgUACgCGUCAGGu- -3'
miRNA:   3'- ucUUUGCGCGGCa---GUGgGUAGUCCua -5'
33175 3' -55.2 NC_007497.1 + 27794 0.7 0.386648
Target:  5'- -uGAACGUGCCGUCccacguGCCCGaguacgugcgcgucUCAGGAUc -3'
miRNA:   3'- ucUUUGCGCGGCAG------UGGGU--------------AGUCCUA- -5'
33175 3' -55.2 NC_007497.1 + 42792 0.71 0.36235
Target:  5'- uGGAAAUGCGCgaGUCGuuCCgGUCGGGAa -3'
miRNA:   3'- -UCUUUGCGCGg-CAGU--GGgUAGUCCUa -5'
33175 3' -55.2 NC_007497.1 + 40891 1.05 0.001324
Target:  5'- cAGAAACGCGCCGUCACCCAUCAGGAUc -3'
miRNA:   3'- -UCUUUGCGCGGCAGUGGGUAGUCCUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.