miRNA display CGI


Results 1 - 20 of 29 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33175 5' -57.1 NC_007497.1 + 40927 1.12 0.000358
Target:  5'- gCCAUCGCGAUGACCGAGGCUGCCGACg -3'
miRNA:   3'- -GGUAGCGCUACUGGCUCCGACGGCUG- -5'
33175 5' -57.1 NC_007497.1 + 35812 0.66 0.554536
Target:  5'- gCCGUCGCG----UCGAgcGGCUGCCG-Cg -3'
miRNA:   3'- -GGUAGCGCuacuGGCU--CCGACGGCuG- -5'
33175 5' -57.1 NC_007497.1 + 37050 0.67 0.533188
Target:  5'- aCGUCaCGAUG-CCGucgacGGCcGCCGACc -3'
miRNA:   3'- gGUAGcGCUACuGGCu----CCGaCGGCUG- -5'
33175 5' -57.1 NC_007497.1 + 19328 0.67 0.533188
Target:  5'- -gAUCGCGGcuACCGAuggagaucgggGGC-GCCGACa -3'
miRNA:   3'- ggUAGCGCUacUGGCU-----------CCGaCGGCUG- -5'
33175 5' -57.1 NC_007497.1 + 4 0.67 0.533188
Target:  5'- aCGU-GCGGUcuaGGCCGAGGCgGCCaucaGACu -3'
miRNA:   3'- gGUAgCGCUA---CUGGCUCCGaCGG----CUG- -5'
33175 5' -57.1 NC_007497.1 + 28520 0.67 0.522623
Target:  5'- gCG-CGCGGUcGaAUgGAGGCUGuCCGGCg -3'
miRNA:   3'- gGUaGCGCUA-C-UGgCUCCGAC-GGCUG- -5'
33175 5' -57.1 NC_007497.1 + 44680 0.67 0.522623
Target:  5'- gCCugcCGCGAUGGCCGcguccuuauuGGacuUGCCGGCc -3'
miRNA:   3'- -GGua-GCGCUACUGGCu---------CCg--ACGGCUG- -5'
33175 5' -57.1 NC_007497.1 + 1534 0.67 0.511097
Target:  5'- aCCGaaUCGCGAUGacggaucGCCGAuaugagcaaaGGCU-CCGGCa -3'
miRNA:   3'- -GGU--AGCGCUAC-------UGGCU----------CCGAcGGCUG- -5'
33175 5' -57.1 NC_007497.1 + 30417 0.68 0.461153
Target:  5'- aCAUUGCGGUGAUCGuGccguugauGUcGCCGACa -3'
miRNA:   3'- gGUAGCGCUACUGGCuC--------CGaCGGCUG- -5'
33175 5' -57.1 NC_007497.1 + 22083 0.68 0.441516
Target:  5'- uCCGUCGCGGUGACgGAaGuCUaGUgGACg -3'
miRNA:   3'- -GGUAGCGCUACUGgCUcC-GA-CGgCUG- -5'
33175 5' -57.1 NC_007497.1 + 30125 0.68 0.432835
Target:  5'- aCCAUgGCGGUguauccgcacucggGACCGcGGUagcgccacuggcacgUGCCGACg -3'
miRNA:   3'- -GGUAgCGCUA--------------CUGGCuCCG---------------ACGGCUG- -5'
33175 5' -57.1 NC_007497.1 + 28835 0.7 0.34272
Target:  5'- cCCAUCGCGAUcagcGACgGuuGCUcaaacacgaaGCCGACg -3'
miRNA:   3'- -GGUAGCGCUA----CUGgCucCGA----------CGGCUG- -5'
33175 5' -57.1 NC_007497.1 + 2625 0.69 0.422362
Target:  5'- -aAUCGCaagGAUGcGCCGcGGCcGCCGGCg -3'
miRNA:   3'- ggUAGCG---CUAC-UGGCuCCGaCGGCUG- -5'
33175 5' -57.1 NC_007497.1 + 27588 0.69 0.403716
Target:  5'- gCAUCGCcuacuGggGGCCGGGaGCUGUCGuCg -3'
miRNA:   3'- gGUAGCG-----CuaCUGGCUC-CGACGGCuG- -5'
33175 5' -57.1 NC_007497.1 + 3783 0.69 0.3856
Target:  5'- gCCggCGCGAUgaacaaGACCGAGcagcGCUacGCCGACc -3'
miRNA:   3'- -GGuaGCGCUA------CUGGCUC----CGA--CGGCUG- -5'
33175 5' -57.1 NC_007497.1 + 1197 0.69 0.376745
Target:  5'- uCCG-CGCGAagGugUGGGaGCUGCCGGa -3'
miRNA:   3'- -GGUaGCGCUa-CugGCUC-CGACGGCUg -5'
33175 5' -57.1 NC_007497.1 + 22750 0.7 0.350179
Target:  5'- aCAUCGUGAUGAgCGAgaauaauGGCguagGcCCGACu -3'
miRNA:   3'- gGUAGCGCUACUgGCU-------CCGa---C-GGCUG- -5'
33175 5' -57.1 NC_007497.1 + 40984 0.72 0.250405
Target:  5'- gUCAUCGCGAUGGCCGGcgacgagauccugauGGgUGaCGGCg -3'
miRNA:   3'- -GGUAGCGCUACUGGCU---------------CCgACgGCUG- -5'
33175 5' -57.1 NC_007497.1 + 35141 0.73 0.235336
Target:  5'- -gGUCGCGGcgcaGGCCGAGcUUGCCGGCa -3'
miRNA:   3'- ggUAGCGCUa---CUGGCUCcGACGGCUG- -5'
33175 5' -57.1 NC_007497.1 + 4754 0.66 0.597905
Target:  5'- ---cCGCGAUGAagcccuaCGAccuGGCUGCCGuaACg -3'
miRNA:   3'- gguaGCGCUACUg------GCU---CCGACGGC--UG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.