miRNA display CGI


Results 21 - 38 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33178 5' -48.2 NC_007497.1 + 11567 0.68 0.925065
Target:  5'- --gCCUCGCGCgGcugaaguaaaagcGCGgGAAAUGGCg -3'
miRNA:   3'- gaaGGAGCGCGgU-------------UGUgUUUUACUGg -5'
33178 5' -48.2 NC_007497.1 + 19355 0.68 0.919369
Target:  5'- --aCgUCGCGgCGcacugGCGCGAAAUGAUCu -3'
miRNA:   3'- gaaGgAGCGCgGU-----UGUGUUUUACUGG- -5'
33178 5' -48.2 NC_007497.1 + 947 0.68 0.919369
Target:  5'- -aUCg-CGCGCCGuACGCGGuAAUGGCUg -3'
miRNA:   3'- gaAGgaGCGCGGU-UGUGUU-UUACUGG- -5'
33178 5' -48.2 NC_007497.1 + 4204 0.68 0.912744
Target:  5'- aUUCCg-GCGCCAugcGCACGAA---GCCg -3'
miRNA:   3'- gAAGGagCGCGGU---UGUGUUUuacUGG- -5'
33178 5' -48.2 NC_007497.1 + 35862 0.69 0.883172
Target:  5'- -gUCCU-GCGCgAcCGCAAAAUcGACCu -3'
miRNA:   3'- gaAGGAgCGCGgUuGUGUUUUA-CUGG- -5'
33178 5' -48.2 NC_007497.1 + 2745 0.69 0.883172
Target:  5'- --aUCUCGCGCCG-CACG--GUGAUg -3'
miRNA:   3'- gaaGGAGCGCGGUuGUGUuuUACUGg -5'
33178 5' -48.2 NC_007497.1 + 3725 0.69 0.875034
Target:  5'- gUUCaUCGCGCCGGCcuuCAGuc-GACCg -3'
miRNA:   3'- gAAGgAGCGCGGUUGu--GUUuuaCUGG- -5'
33178 5' -48.2 NC_007497.1 + 34146 0.69 0.875034
Target:  5'- uUUCCUCGaCGCCGAgAUuuuc-GGCCu -3'
miRNA:   3'- gAAGGAGC-GCGGUUgUGuuuuaCUGG- -5'
33178 5' -48.2 NC_007497.1 + 2108 0.69 0.875034
Target:  5'- cCUUCaUCGCGCCAGC-CuucccGUGACg -3'
miRNA:   3'- -GAAGgAGCGCGGUUGuGuuu--UACUGg -5'
33178 5' -48.2 NC_007497.1 + 40916 0.69 0.857912
Target:  5'- -aUCCgUCGCcgGCCAuCGCGA--UGACCg -3'
miRNA:   3'- gaAGG-AGCG--CGGUuGUGUUuuACUGG- -5'
33178 5' -48.2 NC_007497.1 + 3944 0.7 0.848945
Target:  5'- gUUCUUCGUGCCGGCGuCGAcccgcaucGGCCa -3'
miRNA:   3'- gAAGGAGCGCGGUUGU-GUUuua-----CUGG- -5'
33178 5' -48.2 NC_007497.1 + 14879 0.7 0.839721
Target:  5'- -aUCgUCGcCGCCGACGCu-GAUG-CCg -3'
miRNA:   3'- gaAGgAGC-GCGGUUGUGuuUUACuGG- -5'
33178 5' -48.2 NC_007497.1 + 5616 0.7 0.839721
Target:  5'- --gCCUCaacgaucaGCGUCAGCGCGuAcgGACCg -3'
miRNA:   3'- gaaGGAG--------CGCGGUUGUGUuUuaCUGG- -5'
33178 5' -48.2 NC_007497.1 + 15505 0.7 0.830248
Target:  5'- gUUUCUCuGCGCCGcauaucGCGCAGGAgcgcugacaUGGCCu -3'
miRNA:   3'- gAAGGAG-CGCGGU------UGUGUUUU---------ACUGG- -5'
33178 5' -48.2 NC_007497.1 + 32811 0.7 0.817582
Target:  5'- ---gCUCGCGCCAACACGccaaucgcgcugcaAcGUGAgCCg -3'
miRNA:   3'- gaagGAGCGCGGUUGUGU--------------UuUACU-GG- -5'
33178 5' -48.2 NC_007497.1 + 28289 0.7 0.810606
Target:  5'- gCUUCggCGUGCCuGCGCugcagaAGAGUGACCc -3'
miRNA:   3'- -GAAGgaGCGCGGuUGUG------UUUUACUGG- -5'
33178 5' -48.2 NC_007497.1 + 14784 0.74 0.608453
Target:  5'- gCUUgCUCGuCGCCGACugcucgGCGgcAAAUGACCg -3'
miRNA:   3'- -GAAgGAGC-GCGGUUG------UGU--UUUACUGG- -5'
33178 5' -48.2 NC_007497.1 + 43950 1.14 0.001999
Target:  5'- uCUUCCUCGCGCCAACACAAAAUGACCg -3'
miRNA:   3'- -GAAGGAGCGCGGUUGUGUUUUACUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.