miRNA: 3'- cuGUAgUGGCCGCuGG---------GUCGGUUGCa -5'
miRNA: 3'- -CUGUAGUGGCCGCUGGGUCGGUUGCA- -5'
Results 1 - 2 of 2 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
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| Predicted miRNA align pattern | |||||||
| 33242 | 3' | -57.5 | NC_007582.1 | + | 3198 | 0.7 | 0.02738 |
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Target: 5'- -cCAUgGCCGGCGuCCagguuuuuaCAGCCGACGg -3' miRNA: 3'- cuGUAgUGGCCGCuGG---------GUCGGUUGCa -5' |
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| 33242 | 3' | -57.5 | NC_007582.1 | + | 1335 | 1.06 | 1.4e-05 |
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Target: 5'- aGACAUCACCGGCGACCCAGCCAACGUu -3' miRNA: 3'- -CUGUAGUGGCCGCUGGGUCGGUUGCA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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