miRNA display CGI


Results 1 - 20 of 24 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33264 3' -52.1 NC_007605.1 + 5243 0.66 0.991884
Target:  5'- -aCGCAGgGCGGGgaaACGAUUaaucAGCg -3'
miRNA:   3'- gaGCGUCgCGCCUg--UGCUAGaaa-UCG- -5'
33264 3' -52.1 NC_007605.1 + 160501 0.66 0.991884
Target:  5'- --aGCAGCGCGG-CAgaggccucucuCGAguUCUcUAGCa -3'
miRNA:   3'- gagCGUCGCGCCuGU-----------GCU--AGAaAUCG- -5'
33264 3' -52.1 NC_007605.1 + 58516 0.66 0.990719
Target:  5'- --gGCGGCGgGGACGCccGGUgCUgaUAGCa -3'
miRNA:   3'- gagCGUCGCgCCUGUG--CUA-GAa-AUCG- -5'
33264 3' -52.1 NC_007605.1 + 128149 0.66 0.990719
Target:  5'- -gCGCGGCGgGGGCAUugcccagCUUgGGCa -3'
miRNA:   3'- gaGCGUCGCgCCUGUGcua----GAAaUCG- -5'
33264 3' -52.1 NC_007605.1 + 109629 0.66 0.989426
Target:  5'- -cUGCGGUGUgaGGACACGGUCa----- -3'
miRNA:   3'- gaGCGUCGCG--CCUGUGCUAGaaaucg -5'
33264 3' -52.1 NC_007605.1 + 10186 0.66 0.989426
Target:  5'- -gCGCAG-GCGGAgccgUAgGGUCUUUAGa -3'
miRNA:   3'- gaGCGUCgCGCCU----GUgCUAGAAAUCg -5'
33264 3' -52.1 NC_007605.1 + 22148 0.66 0.987996
Target:  5'- -gCGCcaGGCGCgGGGC-CGGUCggcUGGCu -3'
miRNA:   3'- gaGCG--UCGCG-CCUGuGCUAGaa-AUCG- -5'
33264 3' -52.1 NC_007605.1 + 157294 0.66 0.987845
Target:  5'- uCUgGCGGCGCaGGGagucguaggcaaaUugGAUCUggacggUGGCg -3'
miRNA:   3'- -GAgCGUCGCG-CCU-------------GugCUAGAa-----AUCG- -5'
33264 3' -52.1 NC_007605.1 + 58182 0.66 0.984693
Target:  5'- -aCGaCGGCGgGGAguUGGUCUUU-GCa -3'
miRNA:   3'- gaGC-GUCGCgCCUguGCUAGAAAuCG- -5'
33264 3' -52.1 NC_007605.1 + 45109 0.67 0.982802
Target:  5'- uCUCGCAGaGUGGGCAgaUGGUCcgugaGGCa -3'
miRNA:   3'- -GAGCGUCgCGCCUGU--GCUAGaaa--UCG- -5'
33264 3' -52.1 NC_007605.1 + 112548 0.67 0.978499
Target:  5'- cCUCGCAGCGCGG-C-CG-UCUgaccgAGa -3'
miRNA:   3'- -GAGCGUCGCGCCuGuGCuAGAaa---UCg -5'
33264 3' -52.1 NC_007605.1 + 52283 0.67 0.97607
Target:  5'- gCUCG-GGCGCGGGC-CGuaCUUUGGUu -3'
miRNA:   3'- -GAGCgUCGCGCCUGuGCuaGAAAUCG- -5'
33264 3' -52.1 NC_007605.1 + 74854 0.67 0.973446
Target:  5'- gCUCGcCAGCGgucCGGGCACucaaaGGUCUccGGCu -3'
miRNA:   3'- -GAGC-GUCGC---GCCUGUG-----CUAGAaaUCG- -5'
33264 3' -52.1 NC_007605.1 + 74077 0.68 0.97062
Target:  5'- -aUGCGGCGCaGACagcccACGAUCUUgggacGCa -3'
miRNA:   3'- gaGCGUCGCGcCUG-----UGCUAGAAau---CG- -5'
33264 3' -52.1 NC_007605.1 + 65307 0.68 0.957162
Target:  5'- uCUgGCGGUGCGGGCACag-Cg--GGCc -3'
miRNA:   3'- -GAgCGUCGCGCCUGUGcuaGaaaUCG- -5'
33264 3' -52.1 NC_007605.1 + 2860 0.69 0.953231
Target:  5'- -cCGgGGC-CGGugGCGGUCUggUAGUa -3'
miRNA:   3'- gaGCgUCGcGCCugUGCUAGAa-AUCG- -5'
33264 3' -52.1 NC_007605.1 + 156164 0.69 0.949063
Target:  5'- -gUGCGGCgGCGGucuCugGAUCgugaUAGCg -3'
miRNA:   3'- gaGCGUCG-CGCCu--GugCUAGaa--AUCG- -5'
33264 3' -52.1 NC_007605.1 + 77178 0.69 0.944656
Target:  5'- --aGCGGgaGCGGGCACG-UCgggUGGCg -3'
miRNA:   3'- gagCGUCg-CGCCUGUGCuAGaa-AUCG- -5'
33264 3' -52.1 NC_007605.1 + 61440 0.71 0.900583
Target:  5'- gUCGCGGCGgGGGCgGCGG-Cg--GGCg -3'
miRNA:   3'- gAGCGUCGCgCCUG-UGCUaGaaaUCG- -5'
33264 3' -52.1 NC_007605.1 + 159034 0.71 0.893976
Target:  5'- -gCGCcGgGCGGACGCGGUC---AGCc -3'
miRNA:   3'- gaGCGuCgCGCCUGUGCUAGaaaUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.