Results 21 - 31 of 31 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33265 | 3' | -56.1 | NC_007605.1 | + | 38819 | 0.66 | 0.919726 |
Target: 5'- cGGcugCCccaGGACCUGGCgGcGGcGCAGCGg -3' miRNA: 3'- aCCa--GG---UCUGGACUGaCaCC-CGUUGC- -5' |
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33265 | 3' | -56.1 | NC_007605.1 | + | 38694 | 0.66 | 0.919726 |
Target: 5'- cGGcugCCccaGGACCUGGCgGcGGcGCAGCGg -3' miRNA: 3'- aCCa--GG---UCUGGACUGaCaCC-CGUUGC- -5' |
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33265 | 3' | -56.1 | NC_007605.1 | + | 39318 | 0.66 | 0.919726 |
Target: 5'- cGGcugCCccaGGACCUGGCgGcGGcGCAGCGg -3' miRNA: 3'- aCCa--GG---UCUGGACUGaCaCC-CGUUGC- -5' |
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33265 | 3' | -56.1 | NC_007605.1 | + | 39443 | 0.66 | 0.919726 |
Target: 5'- cGGcugCCccaGGACCUGGCgGcGGcGCAGCGg -3' miRNA: 3'- aCCa--GG---UCUGGACUGaCaCC-CGUUGC- -5' |
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33265 | 3' | -56.1 | NC_007605.1 | + | 39568 | 0.66 | 0.919726 |
Target: 5'- cGGcugCCccaGGACCUGGCgGcGGcGCAGCGg -3' miRNA: 3'- aCCa--GG---UCUGGACUGaCaCC-CGUUGC- -5' |
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33265 | 3' | -56.1 | NC_007605.1 | + | 39693 | 0.66 | 0.919726 |
Target: 5'- cGGcugCCccaGGACCUGGCgGcGGcGCAGCGg -3' miRNA: 3'- aCCa--GG---UCUGGACUGaCaCC-CGUUGC- -5' |
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33265 | 3' | -56.1 | NC_007605.1 | + | 39818 | 0.66 | 0.919726 |
Target: 5'- cGGcugCCccaGGACCUGGCgGcGGcGCAGCGg -3' miRNA: 3'- aCCa--GG---UCUGGACUGaCaCC-CGUUGC- -5' |
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33265 | 3' | -56.1 | NC_007605.1 | + | 39943 | 0.66 | 0.919726 |
Target: 5'- cGGcugCCccaGGACCUGGCgGcGGcGCAGCGg -3' miRNA: 3'- aCCa--GG---UCUGGACUGaCaCC-CGUUGC- -5' |
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33265 | 3' | -56.1 | NC_007605.1 | + | 109979 | 0.66 | 0.901879 |
Target: 5'- ---aCCAGACCUGgaagaugaggguGCUcaaaccGUGGGCGACa -3' miRNA: 3'- accaGGUCUGGAC------------UGA------CACCCGUUGc -5' |
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33265 | 3' | -56.1 | NC_007605.1 | + | 166516 | 0.66 | 0.914011 |
Target: 5'- cGGaUCAGuCgCUGGCUgGUGGGCAuCGg -3' miRNA: 3'- aCCaGGUCuG-GACUGA-CACCCGUuGC- -5' |
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33265 | 3' | -56.1 | NC_007605.1 | + | 38569 | 0.66 | 0.919726 |
Target: 5'- cGGcugCCccaGGACCUGGCgGcGGcGCAGCGg -3' miRNA: 3'- aCCa--GG---UCUGGACUGaCaCC-CGUUGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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