miRNA display CGI


Results 21 - 31 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33265 3' -56.1 NC_007605.1 + 171180 0.67 0.86759
Target:  5'- gGGUCCgcGGGCUccgggGGCUGcGGGCggUGg -3'
miRNA:   3'- aCCAGG--UCUGGa----CUGACaCCCGuuGC- -5'
33265 3' -56.1 NC_007605.1 + 160943 0.68 0.836378
Target:  5'- aGGUCUagAGACCc--CUG-GGGCGGCGa -3'
miRNA:   3'- aCCAGG--UCUGGacuGACaCCCGUUGC- -5'
33265 3' -56.1 NC_007605.1 + 170643 0.68 0.828099
Target:  5'- gGGUCCgcGGGCUccggGGCUGcGGGCggUGg -3'
miRNA:   3'- aCCAGG--UCUGGa---CUGACaCCCGuuGC- -5'
33265 3' -56.1 NC_007605.1 + 106751 0.68 0.819645
Target:  5'- ---cCCAGACCgcagGGCggugGUGGGCGAUu -3'
miRNA:   3'- accaGGUCUGGa---CUGa---CACCCGUUGc -5'
33265 3' -56.1 NC_007605.1 + 38882 0.68 0.81879
Target:  5'- aGGUCCuGGggcagccgggguuCCUGGCgcuccggGGGCAGCGg -3'
miRNA:   3'- aCCAGGuCU-------------GGACUGaca----CCCGUUGC- -5'
33265 3' -56.1 NC_007605.1 + 59736 0.68 0.811022
Target:  5'- gGGUCUGGACCcgGGCcGUGcgagcaaaGGCGGCGa -3'
miRNA:   3'- aCCAGGUCUGGa-CUGaCAC--------CCGUUGC- -5'
33265 3' -56.1 NC_007605.1 + 99297 0.69 0.775012
Target:  5'- gUGGgugUCAGACCUgaaGACUGuUGGGUAgaugGCGa -3'
miRNA:   3'- -ACCa--GGUCUGGA---CUGAC-ACCCGU----UGC- -5'
33265 3' -56.1 NC_007605.1 + 95417 0.69 0.775012
Target:  5'- aGGUcaCCAGACagagaUGcuACUG-GGGCAACGg -3'
miRNA:   3'- aCCA--GGUCUGg----AC--UGACaCCCGUUGC- -5'
33265 3' -56.1 NC_007605.1 + 112080 0.72 0.626695
Target:  5'- aGGUCCAGGuuUGGgaGUGGGcCAAUa -3'
miRNA:   3'- aCCAGGUCUggACUgaCACCC-GUUGc -5'
33265 3' -56.1 NC_007605.1 + 104880 0.74 0.506961
Target:  5'- cUGGUCCGcGACCUgacccggaGACUGgcccccGGGCGGCGc -3'
miRNA:   3'- -ACCAGGU-CUGGA--------CUGACa-----CCCGUUGC- -5'
33265 3' -56.1 NC_007605.1 + 3909 1.09 0.003046
Target:  5'- cUGGUCCAGACCUGACUGUGGGCAACGa -3'
miRNA:   3'- -ACCAGGUCUGGACUGACACCCGUUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.