miRNA display CGI


Results 41 - 60 of 207 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33265 5' -63.3 NC_007605.1 + 74853 0.66 0.601865
Target:  5'- cUCGCCAGCGGUccgggcacucaaAGGUCuccggcuccuCAGGGaGCUg -3'
miRNA:   3'- aGGCGGUCGCCG------------UCCAG----------GUCCCcUGG- -5'
33265 5' -63.3 NC_007605.1 + 143124 0.66 0.601865
Target:  5'- cCCGCUc-CGGCGGGgauGGGGGugCg -3'
miRNA:   3'- aGGCGGucGCCGUCCaggUCCCCugG- -5'
33265 5' -63.3 NC_007605.1 + 125808 0.66 0.601865
Target:  5'- cCCGCCcgcugaagGGCGGaCAGG---GGGGGAUCc -3'
miRNA:   3'- aGGCGG--------UCGCC-GUCCaggUCCCCUGG- -5'
33265 5' -63.3 NC_007605.1 + 61511 0.66 0.592259
Target:  5'- cUCCGCCcGCaGGUAGG-CCGcccGGGCCa -3'
miRNA:   3'- -AGGCGGuCG-CCGUCCaGGUcc-CCUGG- -5'
33265 5' -63.3 NC_007605.1 + 54744 0.67 0.586507
Target:  5'- gCCGCCGcugcugccGCGGCuGaGUCCguauugucuggcagcAGGGaGGCCa -3'
miRNA:   3'- aGGCGGU--------CGCCGuC-CAGG---------------UCCC-CUGG- -5'
33265 5' -63.3 NC_007605.1 + 122301 0.67 0.582678
Target:  5'- gUCCGCUuGuCGGCGGGaUUC-GGGG-CCa -3'
miRNA:   3'- -AGGCGGuC-GCCGUCC-AGGuCCCCuGG- -5'
33265 5' -63.3 NC_007605.1 + 125860 0.67 0.581722
Target:  5'- cUCCauCCAGCagugcaaGGcCGGGgacagaCCGGGGGACCu -3'
miRNA:   3'- -AGGc-GGUCG-------CC-GUCCa-----GGUCCCCUGG- -5'
33265 5' -63.3 NC_007605.1 + 142900 0.67 0.573129
Target:  5'- cCCGCCGGagcggGGCAGcgacCCAGcGGACCc -3'
miRNA:   3'- aGGCGGUCg----CCGUCca--GGUCcCCUGG- -5'
33265 5' -63.3 NC_007605.1 + 85759 0.67 0.573129
Target:  5'- aCCGCUgaGGCGGCcauGG-CCGuuGGGGAaCCc -3'
miRNA:   3'- aGGCGG--UCGCCGu--CCaGGU--CCCCU-GG- -5'
33265 5' -63.3 NC_007605.1 + 170101 0.67 0.573129
Target:  5'- --gGCgGGCGGCggggggucgGGGUCCGcgggcuccGGGGGCUg -3'
miRNA:   3'- aggCGgUCGCCG---------UCCAGGU--------CCCCUGG- -5'
33265 5' -63.3 NC_007605.1 + 104759 0.67 0.573129
Target:  5'- gCCGCUAGuUGGUccaGGGUCCAGGagaaGGCUc -3'
miRNA:   3'- aGGCGGUC-GCCG---UCCAGGUCCc---CUGG- -5'
33265 5' -63.3 NC_007605.1 + 169564 0.67 0.573129
Target:  5'- --gGCgGGCGGCggggggucgGGGUCCGcgggcuccGGGGGCUg -3'
miRNA:   3'- aggCGgUCGCCG---------UCCAGGU--------CCCCUGG- -5'
33265 5' -63.3 NC_007605.1 + 171161 0.67 0.573129
Target:  5'- --gGCgGGCGGCggggggucgGGGUCCGcgggcuccGGGGGCUg -3'
miRNA:   3'- aggCGgUCGCCG---------UCCAGGU--------CCCCUGG- -5'
33265 5' -63.3 NC_007605.1 + 59110 0.67 0.563617
Target:  5'- cCCGCCcugAGCuGGacgAGGUCCuggacgAGGGGGCg -3'
miRNA:   3'- aGGCGG---UCG-CCg--UCCAGG------UCCCCUGg -5'
33265 5' -63.3 NC_007605.1 + 103165 0.67 0.563617
Target:  5'- gUCCGCCAGCcu-GGGUgCCAGGGuGuCUg -3'
miRNA:   3'- -AGGCGGUCGccgUCCA-GGUCCC-CuGG- -5'
33265 5' -63.3 NC_007605.1 + 62033 0.67 0.562669
Target:  5'- aCCGCCcGCcGcCGGG-CCAGGGGcagcgagGCCa -3'
miRNA:   3'- aGGCGGuCGcC-GUCCaGGUCCCC-------UGG- -5'
33265 5' -63.3 NC_007605.1 + 63052 0.67 0.554148
Target:  5'- gCCGUCuGGCGcGCAGGgcugcuggccCCGGGGGAg- -3'
miRNA:   3'- aGGCGG-UCGC-CGUCCa---------GGUCCCCUgg -5'
33265 5' -63.3 NC_007605.1 + 52453 0.67 0.554148
Target:  5'- gCUGCC-GCGGguGGUUgAGGGcauGCCc -3'
miRNA:   3'- aGGCGGuCGCCguCCAGgUCCCc--UGG- -5'
33265 5' -63.3 NC_007605.1 + 104530 0.67 0.554148
Target:  5'- -aUGCuCAGUGGCc-GUCuggCAGGGGGCCg -3'
miRNA:   3'- agGCG-GUCGCCGucCAG---GUCCCCUGG- -5'
33265 5' -63.3 NC_007605.1 + 15297 0.67 0.544727
Target:  5'- gUUGCUga-GGCcgGGGUCCAgGGGGACCc -3'
miRNA:   3'- aGGCGGucgCCG--UCCAGGU-CCCCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.