Results 41 - 47 of 47 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. |
strand
|
Start Position | R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 33267 | 3' | -55.7 | NC_007605.1 | + | 54713 | 0.7 | 0.731661 |
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Target: 5'- cGCCAcCCCCGCGGC-UACCGCc---- -3' miRNA: 3'- -CGGUaGGGGCGUUGcGUGGCGuuagu -5' |
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| 33267 | 3' | -55.7 | NC_007605.1 | + | 171410 | 0.7 | 0.769997 |
|
Target: 5'- cCCgAUCCCCGgAACGUccGCCGCcAUCc -3' miRNA: 3'- cGG-UAGGGGCgUUGCG--UGGCGuUAGu -5' |
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| 33267 | 3' | -55.7 | NC_007605.1 | + | 170872 | 0.7 | 0.769997 |
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Target: 5'- cCCgAUCCCCGgAACGUccGCCGCcAUCc -3' miRNA: 3'- cGG-UAGGGGCgUUGCG--UGGCGuUAGu -5' |
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| 33267 | 3' | -55.7 | NC_007605.1 | + | 170350 | 0.7 | 0.769997 |
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Target: 5'- cCCgAUCCCCGgAACGUccGCCGCcAUCc -3' miRNA: 3'- cGG-UAGGGGCgUUGCG--UGGCGuUAGu -5' |
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| 33267 | 3' | -55.7 | NC_007605.1 | + | 169813 | 0.7 | 0.769997 |
|
Target: 5'- cCCgAUCCCCGgAACGUccGCCGCcAUCc -3' miRNA: 3'- cGG-UAGGGGCgUUGCG--UGGCGuUAGu -5' |
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| 33267 | 3' | -55.7 | NC_007605.1 | + | 134736 | 0.7 | 0.778375 |
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Target: 5'- cGCCGUCCUcgaaggcuagaCGCAgcuguguGCGCGCCGCcagCAu -3' miRNA: 3'- -CGGUAGGG-----------GCGU-------UGCGUGGCGuuaGU- -5' |
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| 33267 | 3' | -55.7 | NC_007605.1 | + | 41537 | 0.66 | 0.937922 |
|
Target: 5'- uCCGUCCCCGgGACGUGgUGCu-UCc -3' miRNA: 3'- cGGUAGGGGCgUUGCGUgGCGuuAGu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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