Results 41 - 47 of 47 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 33267 | 3' | -55.7 | NC_007605.1 | + | 63249 | 0.7 | 0.731661 |
|
Target: 5'- gGCCAgcagCCCUGC-GCGCcagacggccGCCGCAcUCAg -3' miRNA: 3'- -CGGUa---GGGGCGuUGCG---------UGGCGUuAGU- -5' |
|||||||
| 33267 | 3' | -55.7 | NC_007605.1 | + | 54713 | 0.7 | 0.731661 |
|
Target: 5'- cGCCAcCCCCGCGGC-UACCGCc---- -3' miRNA: 3'- -CGGUaGGGGCGUUGcGUGGCGuuagu -5' |
|||||||
| 33267 | 3' | -55.7 | NC_007605.1 | + | 155540 | 0.71 | 0.671771 |
|
Target: 5'- cGCCAUcCCCCGCcuccaGCACCGgGAcUCGu -3' miRNA: 3'- -CGGUA-GGGGCGuug--CGUGGCgUU-AGU- -5' |
|||||||
| 33267 | 3' | -55.7 | NC_007605.1 | + | 63653 | 0.72 | 0.631083 |
|
Target: 5'- aGCCGUgCCCCGCcgauGCGCGCCuCuauGUCGc -3' miRNA: 3'- -CGGUA-GGGGCGu---UGCGUGGcGu--UAGU- -5' |
|||||||
| 33267 | 3' | -55.7 | NC_007605.1 | + | 63528 | 0.72 | 0.620893 |
|
Target: 5'- gGCCAUCCCuCGCA--GCACCGuCAAg-- -3' miRNA: 3'- -CGGUAGGG-GCGUugCGUGGC-GUUagu -5' |
|||||||
| 33267 | 3' | -55.7 | NC_007605.1 | + | 108249 | 0.73 | 0.570216 |
|
Target: 5'- aCCAUCaCCCGCAccCGCACCcCAGUCc -3' miRNA: 3'- cGGUAG-GGGCGUu-GCGUGGcGUUAGu -5' |
|||||||
| 33267 | 3' | -55.7 | NC_007605.1 | + | 4408 | 1.1 | 0.002726 |
|
Target: 5'- uGCCAUCCCCGCAACGCACCGCAAUCAg -3' miRNA: 3'- -CGGUAGGGGCGUUGCGUGGCGUUAGU- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home