miRNA display CGI


Results 1 - 6 of 6 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33267 5' -53.6 NC_007605.1 + 105267 0.66 0.966414
Target:  5'- gCCCGUCgcgugUCUGAGGUGCcauaGCGgUGAa -3'
miRNA:   3'- -GGGCAGa----AGACUUCGUGac--CGC-ACUa -5'
33267 5' -53.6 NC_007605.1 + 151598 0.67 0.955776
Target:  5'- gCCCGUCUcggcCUacGAGGCcCUGGcCGUGGc -3'
miRNA:   3'- -GGGCAGAa---GA--CUUCGuGACC-GCACUa -5'
33267 5' -53.6 NC_007605.1 + 155649 0.67 0.951773
Target:  5'- uCCaCGUCcagaccCUGAGGCgcGCUGGCGUaGAa -3'
miRNA:   3'- -GG-GCAGaa----GACUUCG--UGACCGCA-CUa -5'
33267 5' -53.6 NC_007605.1 + 151571 0.67 0.947533
Target:  5'- aCC--CUUCUGAAGUAuCUGGCGgUGAc -3'
miRNA:   3'- gGGcaGAAGACUUCGU-GACCGC-ACUa -5'
33267 5' -53.6 NC_007605.1 + 73684 0.69 0.884882
Target:  5'- uCCC-UCgu-UGAAGCACUGuGCGUGGg -3'
miRNA:   3'- -GGGcAGaagACUUCGUGAC-CGCACUa -5'
33267 5' -53.6 NC_007605.1 + 4374 1.07 0.006858
Target:  5'- gCCCGUCUUCUGAAGCACUGGCGUGAUc -3'
miRNA:   3'- -GGGCAGAAGACUUCGUGACCGCACUA- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.