miRNA display CGI


Results 21 - 37 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33269 5' -51.5 NC_007605.1 + 34974 0.67 0.989426
Target:  5'- gCUGCCGGGGucccucCGg--CUGGCCUGgUGg -3'
miRNA:   3'- -GGUGGCUCUu-----GCauaGACCGGACaAC- -5'
33269 5' -51.5 NC_007605.1 + 31905 0.67 0.989426
Target:  5'- gCUGCCGGGGucccucCGg--CUGGCCUGgUGg -3'
miRNA:   3'- -GGUGGCUCUu-----GCauaGACCGGACaAC- -5'
33269 5' -51.5 NC_007605.1 + 28836 0.67 0.989426
Target:  5'- gCUGCCGGGGucccucCGg--CUGGCCUGgUGg -3'
miRNA:   3'- -GGUGGCUCUu-----GCauaGACCGGACaAC- -5'
33269 5' -51.5 NC_007605.1 + 25767 0.67 0.989426
Target:  5'- gCUGCCGGGGucccucCGg--CUGGCCUGgUGg -3'
miRNA:   3'- -GGUGGCUCUu-----GCauaGACCGGACaAC- -5'
33269 5' -51.5 NC_007605.1 + 22698 0.67 0.989426
Target:  5'- gCUGCCGGGGucccucCGg--CUGGCCUGgUGg -3'
miRNA:   3'- -GGUGGCUCUu-----GCauaGACCGGACaAC- -5'
33269 5' -51.5 NC_007605.1 + 19629 0.67 0.989426
Target:  5'- gCUGCCGGGGucccucCGg--CUGGCCUGgUGg -3'
miRNA:   3'- -GGUGGCUCUu-----GCauaGACCGGACaAC- -5'
33269 5' -51.5 NC_007605.1 + 16560 0.67 0.989426
Target:  5'- gCUGCCGGGGucccucCGg--CUGGCCUGgUGg -3'
miRNA:   3'- -GGUGGCUCUu-----GCauaGACCGGACaAC- -5'
33269 5' -51.5 NC_007605.1 + 13491 0.67 0.989426
Target:  5'- gCUGCCGGGGucccucCGg--CUGGCCUGgUGg -3'
miRNA:   3'- -GGUGGCUCUu-----GCauaGACCGGACaAC- -5'
33269 5' -51.5 NC_007605.1 + 151531 0.67 0.989426
Target:  5'- cCCGCCGuGAACucugcccuucaGUGUCUGGCggccgcugcgccCUGUa- -3'
miRNA:   3'- -GGUGGCuCUUG-----------CAUAGACCG------------GACAac -5'
33269 5' -51.5 NC_007605.1 + 85759 0.67 0.987996
Target:  5'- aCCGCUGAG-GCGgccaUGGCC-GUUGg -3'
miRNA:   3'- -GGUGGCUCuUGCauagACCGGaCAAC- -5'
33269 5' -51.5 NC_007605.1 + 35631 0.67 0.984693
Target:  5'- -gGCCGGGGACGUGgccguagUGGCUUGgUUGu -3'
miRNA:   3'- ggUGGCUCUUGCAUag-----ACCGGAC-AAC- -5'
33269 5' -51.5 NC_007605.1 + 56900 0.68 0.98074
Target:  5'- -gGCCGGGu-CGUAgacgaUGGCCUGUUc -3'
miRNA:   3'- ggUGGCUCuuGCAUag---ACCGGACAAc -5'
33269 5' -51.5 NC_007605.1 + 54008 0.68 0.97607
Target:  5'- gCgGCCGGGAACGgcUCaUGGCCc---- -3'
miRNA:   3'- -GgUGGCUCUUGCauAG-ACCGGacaac -5'
33269 5' -51.5 NC_007605.1 + 159609 0.69 0.960862
Target:  5'- gCCACCGAGG----GUCUGGCCa---- -3'
miRNA:   3'- -GGUGGCUCUugcaUAGACCGGacaac -5'
33269 5' -51.5 NC_007605.1 + 158127 0.69 0.960862
Target:  5'- aCCAcCCGGGGGCGUcauagagcuccGUCUGGCUggcGUa- -3'
miRNA:   3'- -GGU-GGCUCUUGCA-----------UAGACCGGa--CAac -5'
33269 5' -51.5 NC_007605.1 + 75900 0.69 0.95323
Target:  5'- aCC-CCGGGGACGUG---GGCCUGg-- -3'
miRNA:   3'- -GGuGGCUCUUGCAUagaCCGGACaac -5'
33269 5' -51.5 NC_007605.1 + 5290 1.11 0.006806
Target:  5'- gCCACCGAGAACGUAUCUGGCCUGUUGa -3'
miRNA:   3'- -GGUGGCUCUUGCAUAGACCGGACAAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.