miRNA display CGI


Results 21 - 40 of 121 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33271 3' -58.1 NC_007605.1 + 150648 0.66 0.867875
Target:  5'- gUCGCAGACccaGCCcUCCUCGgcccuguCCACCUGu -3'
miRNA:   3'- uGGUGUCUG---UGGcAGGAGU-------GGUGGGC- -5'
33271 3' -58.1 NC_007605.1 + 47373 0.66 0.867151
Target:  5'- uCCGCAGGCACCGgacacgcgagaCUCGCCguauGCgCGg -3'
miRNA:   3'- uGGUGUCUGUGGCag---------GAGUGG----UGgGC- -5'
33271 3' -58.1 NC_007605.1 + 28011 0.66 0.86128
Target:  5'- uCCugAGACAgCaggCUCGCCACCCc -3'
miRNA:   3'- uGGugUCUGUgGcagGAGUGGUGGGc -5'
33271 3' -58.1 NC_007605.1 + 13593 0.66 0.86128
Target:  5'- cCCACGGugGaCagGcCCUCuguCCACCCGg -3'
miRNA:   3'- uGGUGUCugU-Gg-CaGGAGu--GGUGGGC- -5'
33271 3' -58.1 NC_007605.1 + 21873 0.66 0.86128
Target:  5'- uCCugAGACAgCaggCUCGCCACCCc -3'
miRNA:   3'- uGGugUCUGUgGcagGAGUGGUGGGc -5'
33271 3' -58.1 NC_007605.1 + 16662 0.66 0.86128
Target:  5'- cCCACGGugGaCagGcCCUCuguCCACCCGg -3'
miRNA:   3'- uGGUGUCugU-Gg-CaGGAGu--GGUGGGC- -5'
33271 3' -58.1 NC_007605.1 + 34148 0.66 0.86128
Target:  5'- uCCugAGACAgCaggCUCGCCACCCc -3'
miRNA:   3'- uGGugUCUGUgGcagGAGUGGUGGGc -5'
33271 3' -58.1 NC_007605.1 + 24942 0.66 0.86128
Target:  5'- uCCugAGACAgCaggCUCGCCACCCc -3'
miRNA:   3'- uGGugUCUGUgGcagGAGUGGUGGGc -5'
33271 3' -58.1 NC_007605.1 + 60774 0.66 0.86128
Target:  5'- gACgGCGGAguCGuuGggCCUgGCCACCCGc -3'
miRNA:   3'- -UGgUGUCU--GUggCa-GGAgUGGUGGGC- -5'
33271 3' -58.1 NC_007605.1 + 31080 0.66 0.86128
Target:  5'- uCCugAGACAgCaggCUCGCCACCCc -3'
miRNA:   3'- uGGugUCUGUgGcagGAGUGGUGGGc -5'
33271 3' -58.1 NC_007605.1 + 18804 0.66 0.86128
Target:  5'- uCCugAGACAgCaggCUCGCCACCCc -3'
miRNA:   3'- uGGugUCUGUgGcagGAGUGGUGGGc -5'
33271 3' -58.1 NC_007605.1 + 15735 0.66 0.86128
Target:  5'- uCCugAGACAgCaggCUCGCCACCCc -3'
miRNA:   3'- uGGugUCUGUgGcagGAGUGGUGGGc -5'
33271 3' -58.1 NC_007605.1 + 32006 0.66 0.86128
Target:  5'- cCCACGGugGaCagGcCCUCuguCCACCCGg -3'
miRNA:   3'- uGGUGUCugU-Gg-CaGGAGu--GGUGGGC- -5'
33271 3' -58.1 NC_007605.1 + 25869 0.66 0.86128
Target:  5'- cCCACGGugGaCagGcCCUCuguCCACCCGg -3'
miRNA:   3'- uGGUGUCugU-Gg-CaGGAGu--GGUGGGC- -5'
33271 3' -58.1 NC_007605.1 + 22800 0.66 0.86128
Target:  5'- cCCACGGugGaCagGcCCUCuguCCACCCGg -3'
miRNA:   3'- uGGUGUCugU-Gg-CaGGAGu--GGUGGGC- -5'
33271 3' -58.1 NC_007605.1 + 19731 0.66 0.86128
Target:  5'- cCCACGGugGaCagGcCCUCuguCCACCCGg -3'
miRNA:   3'- uGGUGUCugU-Gg-CaGGAGu--GGUGGGC- -5'
33271 3' -58.1 NC_007605.1 + 153211 0.66 0.86128
Target:  5'- gGCCACGGgaACGCCGU----GCCGCUCGg -3'
miRNA:   3'- -UGGUGUC--UGUGGCAggagUGGUGGGC- -5'
33271 3' -58.1 NC_007605.1 + 82634 0.66 0.86128
Target:  5'- cAUgGCAGGCcCCGcCCUCggACC-CCCGa -3'
miRNA:   3'- -UGgUGUCUGuGGCaGGAG--UGGuGGGC- -5'
33271 3' -58.1 NC_007605.1 + 35075 0.66 0.86128
Target:  5'- cCCACGGugGaCagGcCCUCuguCCACCCGg -3'
miRNA:   3'- uGGUGUCugU-Gg-CaGGAGu--GGUGGGC- -5'
33271 3' -58.1 NC_007605.1 + 12666 0.66 0.86128
Target:  5'- uCCugAGACAgCaggCUCGCCACCCc -3'
miRNA:   3'- uGGugUCUGUgGcagGAGUGGUGGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.