miRNA display CGI


Results 1 - 20 of 28 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33271 5' -57 NC_007605.1 + 141705 0.66 0.891097
Target:  5'- cGGCGGGgggugccGGCUGCAGCCGgGuC-CGg- -3'
miRNA:   3'- -CUGCCCa------CCGAUGUCGGUgU-GuGCag -5'
33271 5' -57 NC_007605.1 + 40085 0.66 0.88432
Target:  5'- cGACcuGGGUGGgUGCGGuCCGCugGCc-- -3'
miRNA:   3'- -CUG--CCCACCgAUGUC-GGUGugUGcag -5'
33271 5' -57 NC_007605.1 + 150925 0.66 0.877322
Target:  5'- gGACGuGGUcGGCUGgcaccaGGCCugGcCAUGUCa -3'
miRNA:   3'- -CUGC-CCA-CCGAUg-----UCGGugU-GUGCAG- -5'
33271 5' -57 NC_007605.1 + 58305 0.66 0.877322
Target:  5'- uGACGGGagGGCUGCuaucAGCaC-CGgGCGUCc -3'
miRNA:   3'- -CUGCCCa-CCGAUG----UCG-GuGUgUGCAG- -5'
33271 5' -57 NC_007605.1 + 49369 0.66 0.862687
Target:  5'- --aGGGUgGGCUuggGCAGCCGgcgugccauaACGCGUCu -3'
miRNA:   3'- cugCCCA-CCGA---UGUCGGUg---------UGUGCAG- -5'
33271 5' -57 NC_007605.1 + 40553 0.66 0.862687
Target:  5'- aGCGGGUGGC-GCGgggucccuGCCugGCACcaggGUCc -3'
miRNA:   3'- cUGCCCACCGaUGU--------CGGugUGUG----CAG- -5'
33271 5' -57 NC_007605.1 + 143368 0.66 0.862687
Target:  5'- aGCGGGUGGC-GCGgggucccuGCCugGCACcaggGUCc -3'
miRNA:   3'- cUGCCCACCGaUGU--------CGGugUGUG----CAG- -5'
33271 5' -57 NC_007605.1 + 140686 0.66 0.862687
Target:  5'- cGGCGGGggguggccGGCUGCAGCCGgGucCGgGUUc -3'
miRNA:   3'- -CUGCCCa-------CCGAUGUCGGUgU--GUgCAG- -5'
33271 5' -57 NC_007605.1 + 70606 0.67 0.839215
Target:  5'- aGGCuGG-GGCUACuGCCGCAUAUGc- -3'
miRNA:   3'- -CUGcCCaCCGAUGuCGGUGUGUGCag -5'
33271 5' -57 NC_007605.1 + 54400 0.67 0.839215
Target:  5'- -cCGGG-GaCUGCagGGCCugGCGCGUCu -3'
miRNA:   3'- cuGCCCaCcGAUG--UCGGugUGUGCAG- -5'
33271 5' -57 NC_007605.1 + 161654 0.67 0.831011
Target:  5'- cGACcacGGUGGuCUgcGCGGCCACAgACuGUCu -3'
miRNA:   3'- -CUGc--CCACC-GA--UGUCGGUGUgUG-CAG- -5'
33271 5' -57 NC_007605.1 + 60571 0.67 0.822629
Target:  5'- cGGCGGGUGGCca-GGCCcaacgacucCGC-CGUCg -3'
miRNA:   3'- -CUGCCCACCGaugUCGGu--------GUGuGCAG- -5'
33271 5' -57 NC_007605.1 + 60050 0.67 0.822629
Target:  5'- uGGCGGGUGGCUggaACAGgCGgGCGaaUGUg -3'
miRNA:   3'- -CUGCCCACCGA---UGUCgGUgUGU--GCAg -5'
33271 5' -57 NC_007605.1 + 50686 0.67 0.822629
Target:  5'- aGGCGGGUGGCggAgGGCCGaaucucCGCGg- -3'
miRNA:   3'- -CUGCCCACCGa-UgUCGGUgu----GUGCag -5'
33271 5' -57 NC_007605.1 + 163005 0.67 0.822629
Target:  5'- aGACGGGcagcuacgUGGCggggGCGGCCGC-CA-GUCc -3'
miRNA:   3'- -CUGCCC--------ACCGa---UGUCGGUGuGUgCAG- -5'
33271 5' -57 NC_007605.1 + 163665 0.68 0.805362
Target:  5'- -cCGGGcUGGC-GCAGgCGCuGCGCGUCc -3'
miRNA:   3'- cuGCCC-ACCGaUGUCgGUG-UGUGCAG- -5'
33271 5' -57 NC_007605.1 + 123424 0.68 0.796492
Target:  5'- --gGGGUGcaGCUcCAGCCGCAgCAgGUCa -3'
miRNA:   3'- cugCCCAC--CGAuGUCGGUGU-GUgCAG- -5'
33271 5' -57 NC_007605.1 + 151298 0.68 0.787476
Target:  5'- cGAgGGGcaGGCUGCGGCCGCcCAgGg- -3'
miRNA:   3'- -CUgCCCa-CCGAUGUCGGUGuGUgCag -5'
33271 5' -57 NC_007605.1 + 62986 0.69 0.721008
Target:  5'- gGACGGGgGGCU-CGcCCGCgugACGCGUCa -3'
miRNA:   3'- -CUGCCCaCCGAuGUcGGUG---UGUGCAG- -5'
33271 5' -57 NC_007605.1 + 6659 0.7 0.701206
Target:  5'- aGACGuGuGUGGCUGUAGCCAC-C-CGUCc -3'
miRNA:   3'- -CUGC-C-CACCGAUGUCGGUGuGuGCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.