Results 1 - 20 of 25 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33272 | 5' | -45 | NC_007605.1 | + | 7632 | 0.72 | 0.994863 |
Target: 5'- gGGUAGCAUAuGCUAUCCUcaugcauauacAGUCa--- -3' miRNA: 3'- -CCAUCGUAUcCGAUAGGA-----------UUAGauau -5' |
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33272 | 5' | -45 | NC_007605.1 | + | 7662 | 0.92 | 0.305895 |
Target: 5'- gGGUAGUAUAuGCUAUCCUAAUCUGUAu -3' miRNA: 3'- -CCAUCGUAUcCGAUAGGAUUAGAUAU- -5' |
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33272 | 5' | -45 | NC_007605.1 | + | 7692 | 0.96 | 0.180481 |
Target: 5'- gGGUAGCAUAuGCUAUCCUAAUCUAUAu -3' miRNA: 3'- -CCAUCGUAUcCGAUAGGAUUAGAUAU- -5' |
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33272 | 5' | -45 | NC_007605.1 | + | 7722 | 1.11 | 0.027322 |
Target: 5'- gGGUAGCAUAGGCUAUCCUAAUCUAUAu -3' miRNA: 3'- -CCAUCGUAUCCGAUAGGAUUAGAUAU- -5' |
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33272 | 5' | -45 | NC_007605.1 | + | 7752 | 0.86 | 0.552269 |
Target: 5'- gGGUAGUAUAuGCUAUCCUAAUUUAUAu -3' miRNA: 3'- -CCAUCGUAUcCGAUAGGAUUAGAUAU- -5' |
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33272 | 5' | -45 | NC_007605.1 | + | 7782 | 0.96 | 0.180481 |
Target: 5'- gGGUAGCAUAuGCUAUCCUAAUCUAUAu -3' miRNA: 3'- -CCAUCGUAUcCGAUAGGAUUAGAUAU- -5' |
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33272 | 5' | -45 | NC_007605.1 | + | 7812 | 1.11 | 0.027322 |
Target: 5'- gGGUAGCAUAGGCUAUCCUAAUCUAUAu -3' miRNA: 3'- -CCAUCGUAUCCGAUAGGAUUAGAUAU- -5' |
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33272 | 5' | -45 | NC_007605.1 | + | 7842 | 0.96 | 0.180481 |
Target: 5'- gGGUAGCAUAuGCUAUCCUAAUCUAUAu -3' miRNA: 3'- -CCAUCGUAUcCGAUAGGAUUAGAUAU- -5' |
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33272 | 5' | -45 | NC_007605.1 | + | 7873 | 0.88 | 0.46762 |
Target: 5'- uGGaUAGCAUAuGCUAUCCUAAUCUAUAu -3' miRNA: 3'- -CC-AUCGUAUcCGAUAGGAUUAGAUAU- -5' |
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33272 | 5' | -45 | NC_007605.1 | + | 7928 | 0.86 | 0.552269 |
Target: 5'- gGGUAGUAUAuGCUAUCCUAAUUUAUAu -3' miRNA: 3'- -CCAUCGUAUcCGAUAGGAUUAGAUAU- -5' |
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33272 | 5' | -45 | NC_007605.1 | + | 7958 | 0.79 | 0.872305 |
Target: 5'- gGGUAGCAUAuGCUAUCCUAAUa---- -3' miRNA: 3'- -CCAUCGUAUcCGAUAGGAUUAgauau -5' |
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33272 | 5' | -45 | NC_007605.1 | + | 7988 | 0.92 | 0.305895 |
Target: 5'- gGGUAGUAUAuGCUAUCCUAAUCUGUAu -3' miRNA: 3'- -CCAUCGUAUcCGAUAGGAUUAGAUAU- -5' |
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33272 | 5' | -45 | NC_007605.1 | + | 8018 | 0.96 | 0.180481 |
Target: 5'- gGGUAGCAUAuGCUAUCCUAAUCUAUAu -3' miRNA: 3'- -CCAUCGUAUcCGAUAGGAUUAGAUAU- -5' |
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33272 | 5' | -45 | NC_007605.1 | + | 8048 | 1.11 | 0.027322 |
Target: 5'- gGGUAGCAUAGGCUAUCCUAAUCUAUAu -3' miRNA: 3'- -CCAUCGUAUCCGAUAGGAUUAGAUAU- -5' |
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33272 | 5' | -45 | NC_007605.1 | + | 8078 | 0.86 | 0.552269 |
Target: 5'- gGGUAGUAUAuGCUAUCCUAAUUUAUAu -3' miRNA: 3'- -CCAUCGUAUcCGAUAGGAUUAGAUAU- -5' |
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33272 | 5' | -45 | NC_007605.1 | + | 8108 | 0.96 | 0.180481 |
Target: 5'- gGGUAGCAUAuGCUAUCCUAAUCUAUAu -3' miRNA: 3'- -CCAUCGUAUcCGAUAGGAUUAGAUAU- -5' |
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33272 | 5' | -45 | NC_007605.1 | + | 8138 | 1.11 | 0.027322 |
Target: 5'- gGGUAGCAUAGGCUAUCCUAAUCUAUAu -3' miRNA: 3'- -CCAUCGUAUCCGAUAGGAUUAGAUAU- -5' |
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33272 | 5' | -45 | NC_007605.1 | + | 8168 | 0.72 | 0.995633 |
Target: 5'- uGGaUAGCAUAuGCUAUC-UAAUCUAUAu -3' miRNA: 3'- -CC-AUCGUAUcCGAUAGgAUUAGAUAU- -5' |
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33272 | 5' | -45 | NC_007605.1 | + | 55690 | 0.66 | 0.999993 |
Target: 5'- cGGUGGCGUggcuucgGGGUUGUCgUGGUUg--- -3' miRNA: 3'- -CCAUCGUA-------UCCGAUAGgAUUAGauau -5' |
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33272 | 5' | -45 | NC_007605.1 | + | 87722 | 0.69 | 0.999809 |
Target: 5'- cGGUGGCGUAGGCUugaCUGGa----- -3' miRNA: 3'- -CCAUCGUAUCCGAuagGAUUagauau -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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