miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33273 3' -40.9 NC_007605.1 + 120777 0.66 1
Target:  5'- -cAGCCCUuuUUCcAGUGGCAUGg--- -3'
miRNA:   3'- gaUUGGGAuuAAG-UUAUCGUAUacaa -5'
33273 3' -40.9 NC_007605.1 + 14862 0.69 1
Target:  5'- -gGACCCUGAgaCGGgugGGUGUGUGUa -3'
miRNA:   3'- gaUUGGGAUUaaGUUa--UCGUAUACAa -5'
33273 3' -40.9 NC_007605.1 + 17931 0.69 1
Target:  5'- -gGACCCUGAgaCGGgugGGUGUGUGUa -3'
miRNA:   3'- gaUUGGGAUUaaGUUa--UCGUAUACAa -5'
33273 3' -40.9 NC_007605.1 + 21000 0.69 1
Target:  5'- -gGACCCUGAgaCGGgugGGUGUGUGUa -3'
miRNA:   3'- gaUUGGGAUUaaGUUa--UCGUAUACAa -5'
33273 3' -40.9 NC_007605.1 + 24069 0.69 1
Target:  5'- -gGACCCUGAgaCGGgugGGUGUGUGUa -3'
miRNA:   3'- gaUUGGGAUUaaGUUa--UCGUAUACAa -5'
33273 3' -40.9 NC_007605.1 + 30206 0.69 1
Target:  5'- -gGACCCUGAgaCGGgugGGUGUGUGUa -3'
miRNA:   3'- gaUUGGGAUUaaGUUa--UCGUAUACAa -5'
33273 3' -40.9 NC_007605.1 + 33275 0.69 1
Target:  5'- -gGACCCUGAgaCGGgugGGUGUGUGUa -3'
miRNA:   3'- gaUUGGGAUUaaGUUa--UCGUAUACAa -5'
33273 3' -40.9 NC_007605.1 + 7753 0.66 1
Target:  5'- --uACCCUAAUcUCuauuagGAUAGCAUAUGc- -3'
miRNA:   3'- gauUGGGAUUA-AG------UUAUCGUAUACaa -5'
33273 3' -40.9 NC_007605.1 + 161163 0.7 0.999999
Target:  5'- -cAGCCCUGAUguucUCAAUcuCAUAUGUg -3'
miRNA:   3'- gaUUGGGAUUA----AGUUAucGUAUACAa -5'
33273 3' -40.9 NC_007605.1 + 9298 0.73 0.999911
Target:  5'- uUAACCCUAAacgGGUAGCAUAUGc- -3'
miRNA:   3'- gAUUGGGAUUaagUUAUCGUAUACaa -5'
33273 3' -40.9 NC_007605.1 + 9010 1.01 0.233177
Target:  5'- aCUAACCCUAAUUCGAUAGCAUAUGc- -3'
miRNA:   3'- -GAUUGGGAUUAAGUUAUCGUAUACaa -5'
33273 3' -40.9 NC_007605.1 + 9245 1.09 0.09237
Target:  5'- aCUAACCCUAAUUCAAUAGCAUAUGUUa -3'
miRNA:   3'- -GAUUGGGAUUAAGUUAUCGUAUACAA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.