Results 21 - 40 of 47 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33274 | 5' | -49.2 | NC_007605.1 | + | 34634 | 0.66 | 0.997944 |
Target: 5'- --aGGGGCCUCUUUGg--GCCCUc-- -3' miRNA: 3'- auaUUCCGGGGGAACaauUGGGAuuu -5' |
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33274 | 5' | -49.2 | NC_007605.1 | + | 51351 | 0.66 | 0.99651 |
Target: 5'- ---cAGGCCCCCgauugaUGgcaaGGCCCUAu- -3' miRNA: 3'- auauUCCGGGGGa-----ACaa--UUGGGAUuu -5' |
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33274 | 5' | -49.2 | NC_007605.1 | + | 56142 | 0.67 | 0.993408 |
Target: 5'- --cGAGGCCaCCUUGU---CCCUGAu -3' miRNA: 3'- auaUUCCGGgGGAACAauuGGGAUUu -5' |
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33274 | 5' | -49.2 | NC_007605.1 | + | 66098 | 0.68 | 0.98303 |
Target: 5'- --cAGGGCCCCCuUUGUgGACCa---- -3' miRNA: 3'- auaUUCCGGGGG-AACAaUUGGgauuu -5' |
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33274 | 5' | -49.2 | NC_007605.1 | + | 66101 | 0.67 | 0.991185 |
Target: 5'- --aAGGGCCUCCUccuUGUuggUGACCUUGGu -3' miRNA: 3'- auaUUCCGGGGGA---ACA---AUUGGGAUUu -5' |
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33274 | 5' | -49.2 | NC_007605.1 | + | 71310 | 0.66 | 0.997944 |
Target: 5'- -----aGCCCCCUggccucucUGACCCUAGAg -3' miRNA: 3'- auauucCGGGGGAaca-----AUUGGGAUUU- -5' |
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33274 | 5' | -49.2 | NC_007605.1 | + | 71524 | 0.68 | 0.988409 |
Target: 5'- --aAGGGCCCCCagg--GugCCUAGAg -3' miRNA: 3'- auaUUCCGGGGGaacaaUugGGAUUU- -5' |
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33274 | 5' | -49.2 | NC_007605.1 | + | 72985 | 0.68 | 0.984998 |
Target: 5'- --gGGGGCCCCCUUGau--CUUUAGAu -3' miRNA: 3'- auaUUCCGGGGGAACaauuGGGAUUU- -5' |
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33274 | 5' | -49.2 | NC_007605.1 | + | 78458 | 0.69 | 0.97595 |
Target: 5'- aGUAAGGCCCCCgacaUGACCa---- -3' miRNA: 3'- aUAUUCCGGGGGaacaAUUGGgauuu -5' |
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33274 | 5' | -49.2 | NC_007605.1 | + | 88077 | 0.67 | 0.994337 |
Target: 5'- aUGUGAGGCCCCgCggcaGgaGGCCCa--- -3' miRNA: 3'- -AUAUUCCGGGG-Gaa--CaaUUGGGauuu -5' |
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33274 | 5' | -49.2 | NC_007605.1 | + | 91498 | 0.66 | 0.997534 |
Target: 5'- ----cGGCCCCCgcagUAACCCc--- -3' miRNA: 3'- auauuCCGGGGGaacaAUUGGGauuu -5' |
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33274 | 5' | -49.2 | NC_007605.1 | + | 104914 | 0.7 | 0.953206 |
Target: 5'- --cAAGGCCCCgccaucccacgaccaCcUGUUGACCCUGGu -3' miRNA: 3'- auaUUCCGGGG---------------GaACAAUUGGGAUUu -5' |
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33274 | 5' | -49.2 | NC_007605.1 | + | 105253 | 0.7 | 0.951477 |
Target: 5'- --aGAGGCCCCCgaGU--GCCCg--- -3' miRNA: 3'- auaUUCCGGGGGaaCAauUGGGauuu -5' |
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33274 | 5' | -49.2 | NC_007605.1 | + | 105264 | 0.68 | 0.98303 |
Target: 5'- ----cGGCCCCCgggGUUuGCCCa--- -3' miRNA: 3'- auauuCCGGGGGaa-CAAuUGGGauuu -5' |
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33274 | 5' | -49.2 | NC_007605.1 | + | 105540 | 0.67 | 0.995158 |
Target: 5'- --gGGGcGCCCCCgUGggAACgCCUGAu -3' miRNA: 3'- auaUUC-CGGGGGaACaaUUG-GGAUUu -5' |
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33274 | 5' | -49.2 | NC_007605.1 | + | 111964 | 0.67 | 0.995158 |
Target: 5'- aAUAGGGCCCCUUUu---GCCCc--- -3' miRNA: 3'- aUAUUCCGGGGGAAcaauUGGGauuu -5' |
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33274 | 5' | -49.2 | NC_007605.1 | + | 113572 | 0.71 | 0.946968 |
Target: 5'- ----uGGUCUCCUUGUUGACCuCUAc- -3' miRNA: 3'- auauuCCGGGGGAACAAUUGG-GAUuu -5' |
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33274 | 5' | -49.2 | NC_007605.1 | + | 120488 | 0.72 | 0.894168 |
Target: 5'- --cAGGGCCCCUUggcUUGGCCCUGc- -3' miRNA: 3'- auaUUCCGGGGGAac-AAUUGGGAUuu -5' |
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33274 | 5' | -49.2 | NC_007605.1 | + | 137127 | 0.68 | 0.989871 |
Target: 5'- cGUAAGGCCCCgagugggUGUagcaggGGCCCUGc- -3' miRNA: 3'- aUAUUCCGGGGga-----ACAa-----UUGGGAUuu -5' |
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33274 | 5' | -49.2 | NC_007605.1 | + | 152647 | 0.71 | 0.946968 |
Target: 5'- ----uGGCCCCCggguccaccgUGggGACCCUGGu -3' miRNA: 3'- auauuCCGGGGGa---------ACaaUUGGGAUUu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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