miRNA display CGI


Results 41 - 60 of 95 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33275 3' -52.4 NC_007605.1 + 61284 0.69 0.899272
Target:  5'- -aGGCGGCUgU--AGCGGACCcaUAGCAg -3'
miRNA:   3'- gaCCGUCGGgAuuUCGUCUGG--AUUGU- -5'
33275 3' -52.4 NC_007605.1 + 29458 0.69 0.899272
Target:  5'- -cGGCcuuagaucuGGCUCUuuGGCAGGCCUgguGACAg -3'
miRNA:   3'- gaCCG---------UCGGGAuuUCGUCUGGA---UUGU- -5'
33275 3' -52.4 NC_007605.1 + 32527 0.69 0.899272
Target:  5'- -cGGCcuuagaucuGGCUCUuuGGCAGGCCUgguGACAg -3'
miRNA:   3'- gaCCG---------UCGGGAuuUCGUCUGGA---UUGU- -5'
33275 3' -52.4 NC_007605.1 + 91435 0.69 0.899272
Target:  5'- -aGGCcgugaaGGCCCUAAGGgAGAUggCUGACAc -3'
miRNA:   3'- gaCCG------UCGGGAUUUCgUCUG--GAUUGU- -5'
33275 3' -52.4 NC_007605.1 + 17182 0.69 0.899272
Target:  5'- -cGGCcuuagaucuGGCUCUuuGGCAGGCCUgguGACAg -3'
miRNA:   3'- gaCCG---------UCGGGAuuUCGUCUGGA---UUGU- -5'
33275 3' -52.4 NC_007605.1 + 14114 0.69 0.899272
Target:  5'- -cGGCcuuagaucuGGCUCUuuGGCAGGCCUgguGACAg -3'
miRNA:   3'- gaCCG---------UCGGGAuuUCGUCUGGA---UUGU- -5'
33275 3' -52.4 NC_007605.1 + 56680 0.69 0.905803
Target:  5'- -aGGCGGCCC----GCAGacGCCUGACc -3'
miRNA:   3'- gaCCGUCGGGauuuCGUC--UGGAUUGu -5'
33275 3' -52.4 NC_007605.1 + 84941 0.68 0.939663
Target:  5'- -gGGUcaGGUCCUGGGGCAGGCagUAGCu -3'
miRNA:   3'- gaCCG--UCGGGAUUUCGUCUGg-AUUGu -5'
33275 3' -52.4 NC_007605.1 + 64820 0.68 0.934658
Target:  5'- gUGGCGGCCUacaUGGAGC---CCUGGCAc -3'
miRNA:   3'- gACCGUCGGG---AUUUCGucuGGAUUGU- -5'
33275 3' -52.4 NC_007605.1 + 2704 0.68 0.943484
Target:  5'- -cGGCGGCCCggcgccaaCAGGCCUuuCAg -3'
miRNA:   3'- gaCCGUCGGGauuuc---GUCUGGAuuGU- -5'
33275 3' -52.4 NC_007605.1 + 53973 0.68 0.944414
Target:  5'- cCUGGCAGCCgccAAGUGGAUCcggGGCAu -3'
miRNA:   3'- -GACCGUCGGgauUUCGUCUGGa--UUGU- -5'
33275 3' -52.4 NC_007605.1 + 60327 0.68 0.948474
Target:  5'- -gGaGCAcGCCCUGGAGCuGggauacaGCCUGACGg -3'
miRNA:   3'- gaC-CGU-CGGGAUUUCGuC-------UGGAUUGU- -5'
33275 3' -52.4 NC_007605.1 + 26030 0.67 0.964465
Target:  5'- cCUGGCGGCCC---AGCccGACCcccgGGCGc -3'
miRNA:   3'- -GACCGUCGGGauuUCGu-CUGGa---UUGU- -5'
33275 3' -52.4 NC_007605.1 + 126751 0.67 0.964465
Target:  5'- -gGGCAGacaUUGGAGCAGcACCUGAUc -3'
miRNA:   3'- gaCCGUCgg-GAUUUCGUC-UGGAUUGu -5'
33275 3' -52.4 NC_007605.1 + 158807 0.67 0.964465
Target:  5'- -aGGUaaAGCCCauccgGGGGCAgGGCCUGGCc -3'
miRNA:   3'- gaCCG--UCGGGa----UUUCGU-CUGGAUUGu -5'
33275 3' -52.4 NC_007605.1 + 13755 0.67 0.964465
Target:  5'- cCUGGCGGCCC---AGCccGACCcccgGGCGc -3'
miRNA:   3'- -GACCGUCGGGauuUCGu-CUGGa---UUGU- -5'
33275 3' -52.4 NC_007605.1 + 16824 0.67 0.964465
Target:  5'- cCUGGCGGCCC---AGCccGACCcccgGGCGc -3'
miRNA:   3'- -GACCGUCGGGauuUCGu-CUGGa---UUGU- -5'
33275 3' -52.4 NC_007605.1 + 106477 0.67 0.95717
Target:  5'- -cGGCGGCU----GGCAGGCCU-GCAc -3'
miRNA:   3'- gaCCGUCGGgauuUCGUCUGGAuUGU- -5'
33275 3' -52.4 NC_007605.1 + 19893 0.67 0.964465
Target:  5'- cCUGGCGGCCC---AGCccGACCcccgGGCGc -3'
miRNA:   3'- -GACCGUCGGGauuUCGu-CUGGa---UUGU- -5'
33275 3' -52.4 NC_007605.1 + 22961 0.67 0.964465
Target:  5'- cCUGGCGGCCC---AGCccGACCcccgGGCGc -3'
miRNA:   3'- -GACCGUCGGGauuUCGu-CUGGa---UUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.