miRNA display CGI


Results 61 - 80 of 95 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33275 3' -52.4 NC_007605.1 + 158807 0.67 0.964465
Target:  5'- -aGGUaaAGCCCauccgGGGGCAgGGCCUGGCc -3'
miRNA:   3'- gaCCG--UCGGGa----UUUCGU-CUGGAUUGu -5'
33275 3' -52.4 NC_007605.1 + 13755 0.67 0.964465
Target:  5'- cCUGGCGGCCC---AGCccGACCcccgGGCGc -3'
miRNA:   3'- -GACCGUCGGGauuUCGu-CUGGa---UUGU- -5'
33275 3' -52.4 NC_007605.1 + 16824 0.67 0.964465
Target:  5'- cCUGGCGGCCC---AGCccGACCcccgGGCGc -3'
miRNA:   3'- -GACCGUCGGGauuUCGu-CUGGa---UUGU- -5'
33275 3' -52.4 NC_007605.1 + 19893 0.67 0.964465
Target:  5'- cCUGGCGGCCC---AGCccGACCcccgGGCGc -3'
miRNA:   3'- -GACCGUCGGGauuUCGu-CUGGa---UUGU- -5'
33275 3' -52.4 NC_007605.1 + 22961 0.67 0.964465
Target:  5'- cCUGGCGGCCC---AGCccGACCcccgGGCGc -3'
miRNA:   3'- -GACCGUCGGGauuUCGu-CUGGa---UUGU- -5'
33275 3' -52.4 NC_007605.1 + 29099 0.67 0.964465
Target:  5'- cCUGGCGGCCC---AGCccGACCcccgGGCGc -3'
miRNA:   3'- -GACCGUCGGGauuUCGu-CUGGa---UUGU- -5'
33275 3' -52.4 NC_007605.1 + 32168 0.67 0.964465
Target:  5'- cCUGGCGGCCC---AGCccGACCcccgGGCGc -3'
miRNA:   3'- -GACCGUCGGGauuUCGu-CUGGa---UUGU- -5'
33275 3' -52.4 NC_007605.1 + 35237 0.67 0.964465
Target:  5'- cCUGGCGGCCC---AGCccGACCcccgGGCGc -3'
miRNA:   3'- -GACCGUCGGGauuUCGu-CUGGa---UUGU- -5'
33275 3' -52.4 NC_007605.1 + 54028 0.67 0.964465
Target:  5'- -aGGCcGCCCUGgcccGGGCAGcgGCCgggAACGg -3'
miRNA:   3'- gaCCGuCGGGAU----UUCGUC--UGGa--UUGU- -5'
33275 3' -52.4 NC_007605.1 + 154142 0.67 0.964465
Target:  5'- gUGGaGGCCCUGAGccccgccaaccuGCAGGCCcUGGCc -3'
miRNA:   3'- gACCgUCGGGAUUU------------CGUCUGG-AUUGu -5'
33275 3' -52.4 NC_007605.1 + 54523 0.67 0.967765
Target:  5'- -cGGUAGCCgCggggguGGCGGGCCaAGCGu -3'
miRNA:   3'- gaCCGUCGG-Gauu---UCGUCUGGaUUGU- -5'
33275 3' -52.4 NC_007605.1 + 65307 0.66 0.970842
Target:  5'- uCUGGCGGUgCgggcacAGCGGGCC-GACAc -3'
miRNA:   3'- -GACCGUCGgGauu---UCGUCUGGaUUGU- -5'
33275 3' -52.4 NC_007605.1 + 114365 0.66 0.976354
Target:  5'- -aGGCAGUCCaGGGGCcacacaGCCUGACu -3'
miRNA:   3'- gaCCGUCGGGaUUUCGuc----UGGAUUGu -5'
33275 3' -52.4 NC_007605.1 + 81496 0.66 0.978804
Target:  5'- cCUGGgAGCcaucCCUGAcacaggcugcggGGCAGGCCUuuGCAc -3'
miRNA:   3'- -GACCgUCG----GGAUU------------UCGUCUGGAu-UGU- -5'
33275 3' -52.4 NC_007605.1 + 11260 0.66 0.978804
Target:  5'- uUGGCGGcCCCUAAGGgGGGgaCUAAg- -3'
miRNA:   3'- gACCGUC-GGGAUUUCgUCUg-GAUUgu -5'
33275 3' -52.4 NC_007605.1 + 85456 0.66 0.978804
Target:  5'- gCUGGCAGCCUUcaccAGGGUccGGcACCagUGACAa -3'
miRNA:   3'- -GACCGUCGGGA----UUUCG--UC-UGG--AUUGU- -5'
33275 3' -52.4 NC_007605.1 + 10610 0.66 0.978804
Target:  5'- gCUGGCccgGGCuCCUAAGaUGGACCUAgaACAa -3'
miRNA:   3'- -GACCG---UCG-GGAUUUcGUCUGGAU--UGU- -5'
33275 3' -52.4 NC_007605.1 + 150624 0.66 0.979038
Target:  5'- -gGGCGGCCCgggcuccagcagaacGucGCAGACCcAGCc -3'
miRNA:   3'- gaCCGUCGGGa--------------UuuCGUCUGGaUUGu -5'
33275 3' -52.4 NC_007605.1 + 55043 0.66 0.98106
Target:  5'- gUGGCGGgCUUAAAGCcuucGGCCUccaGGCGc -3'
miRNA:   3'- gACCGUCgGGAUUUCGu---CUGGA---UUGU- -5'
33275 3' -52.4 NC_007605.1 + 61028 0.66 0.98106
Target:  5'- -gGGCAGCUCguUGGAGaGGACCcGGCGa -3'
miRNA:   3'- gaCCGUCGGG--AUUUCgUCUGGaUUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.