miRNA display CGI


Results 61 - 80 of 95 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33275 3' -52.4 NC_007605.1 + 61362 0.66 0.98106
Target:  5'- -cGGCGGCCCc---GCGGACa-GACGu -3'
miRNA:   3'- gaCCGUCGGGauuuCGUCUGgaUUGU- -5'
33275 3' -52.4 NC_007605.1 + 62723 0.7 0.855025
Target:  5'- -aGGCGGCCCUGGAc--GugCUGGCAu -3'
miRNA:   3'- gaCCGUCGGGAUUUcguCugGAUUGU- -5'
33275 3' -52.4 NC_007605.1 + 64467 0.82 0.304837
Target:  5'- -gGGCAGCCCUGcAGCGGGCCaGGCc -3'
miRNA:   3'- gaCCGUCGGGAUuUCGUCUGGaUUGu -5'
33275 3' -52.4 NC_007605.1 + 64820 0.68 0.934658
Target:  5'- gUGGCGGCCUacaUGGAGC---CCUGGCAc -3'
miRNA:   3'- gACCGUCGGG---AUUUCGucuGGAUUGU- -5'
33275 3' -52.4 NC_007605.1 + 65130 0.73 0.755119
Target:  5'- -cGGCAGCCCcuucauccuuuUGAAGgAGGCCU-GCAa -3'
miRNA:   3'- gaCCGUCGGG-----------AUUUCgUCUGGAuUGU- -5'
33275 3' -52.4 NC_007605.1 + 65307 0.66 0.970842
Target:  5'- uCUGGCGGUgCgggcacAGCGGGCC-GACAc -3'
miRNA:   3'- -GACCGUCGgGauu---UCGUCUGGaUUGU- -5'
33275 3' -52.4 NC_007605.1 + 65612 0.71 0.846857
Target:  5'- gUGGCAuCUCUGAGGCGGG-CUAGCGa -3'
miRNA:   3'- gACCGUcGGGAUUUCGUCUgGAUUGU- -5'
33275 3' -52.4 NC_007605.1 + 69370 0.7 0.885468
Target:  5'- gUGGCAuCCCUGAAGgAGACCc---- -3'
miRNA:   3'- gACCGUcGGGAUUUCgUCUGGauugu -5'
33275 3' -52.4 NC_007605.1 + 71975 0.67 0.95275
Target:  5'- aCUGGCcucAGCCCUauuuaugauucugGAGGCGGGCacgCUGAUg -3'
miRNA:   3'- -GACCG---UCGGGA-------------UUUCGUCUG---GAUUGu -5'
33275 3' -52.4 NC_007605.1 + 81496 0.66 0.978804
Target:  5'- cCUGGgAGCcaucCCUGAcacaggcugcggGGCAGGCCUuuGCAc -3'
miRNA:   3'- -GACCgUCG----GGAUU------------UCGUCUGGAu-UGU- -5'
33275 3' -52.4 NC_007605.1 + 84057 0.72 0.803053
Target:  5'- uCUGGCcuauGCCCgcGGGCAGGCCaugAAUAu -3'
miRNA:   3'- -GACCGu---CGGGauUUCGUCUGGa--UUGU- -5'
33275 3' -52.4 NC_007605.1 + 84359 0.66 0.983132
Target:  5'- -aGGCAGCCagaacAGAGCAGccaagagccacGCCUGAa- -3'
miRNA:   3'- gaCCGUCGGga---UUUCGUC-----------UGGAUUgu -5'
33275 3' -52.4 NC_007605.1 + 84941 0.68 0.939663
Target:  5'- -gGGUcaGGUCCUGGGGCAGGCagUAGCu -3'
miRNA:   3'- gaCCG--UCGGGAUUUCGUCUGg-AUUGu -5'
33275 3' -52.4 NC_007605.1 + 85456 0.66 0.978804
Target:  5'- gCUGGCAGCCUUcaccAGGGUccGGcACCagUGACAa -3'
miRNA:   3'- -GACCGUCGGGA----UUUCG--UC-UGG--AUUGU- -5'
33275 3' -52.4 NC_007605.1 + 90315 0.74 0.704283
Target:  5'- -gGGCAGCCaCUGGuGCAGGCUguggAACAc -3'
miRNA:   3'- gaCCGUCGG-GAUUuCGUCUGGa---UUGU- -5'
33275 3' -52.4 NC_007605.1 + 91435 0.69 0.899272
Target:  5'- -aGGCcgugaaGGCCCUAAGGgAGAUggCUGACAc -3'
miRNA:   3'- gaCCG------UCGGGAUUUCgUCUG--GAUUGU- -5'
33275 3' -52.4 NC_007605.1 + 96824 0.67 0.95717
Target:  5'- -aGGUGGCCCaGAuGguGAgCCUGACGu -3'
miRNA:   3'- gaCCGUCGGGaUUuCguCU-GGAUUGU- -5'
33275 3' -52.4 NC_007605.1 + 106477 0.67 0.95717
Target:  5'- -cGGCGGCU----GGCAGGCCU-GCAc -3'
miRNA:   3'- gaCCGUCGGgauuUCGUCUGGAuUGU- -5'
33275 3' -52.4 NC_007605.1 + 114365 0.66 0.976354
Target:  5'- -aGGCAGUCCaGGGGCcacacaGCCUGACu -3'
miRNA:   3'- gaCCGUCGGGaUUUCGuc----UGGAUUGu -5'
33275 3' -52.4 NC_007605.1 + 123167 0.76 0.567413
Target:  5'- aUGGggaacuuaUAGCCCUAGAGCAGGcCCUGAUg -3'
miRNA:   3'- gACC--------GUCGGGAUUUCGUCU-GGAUUGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.