miRNA display CGI


Results 41 - 60 of 95 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33275 3' -52.4 NC_007605.1 + 55043 0.66 0.98106
Target:  5'- gUGGCGGgCUUAAAGCcuucGGCCUccaGGCGc -3'
miRNA:   3'- gACCGUCgGGAUUUCGu---CUGGA---UUGU- -5'
33275 3' -52.4 NC_007605.1 + 54523 0.67 0.967765
Target:  5'- -cGGUAGCCgCggggguGGCGGGCCaAGCGu -3'
miRNA:   3'- gaCCGUCGG-Gauu---UCGUCUGGaUUGU- -5'
33275 3' -52.4 NC_007605.1 + 54028 0.67 0.964465
Target:  5'- -aGGCcGCCCUGgcccGGGCAGcgGCCgggAACGg -3'
miRNA:   3'- gaCCGuCGGGAU----UUCGUC--UGGa--UUGU- -5'
33275 3' -52.4 NC_007605.1 + 53973 0.68 0.944414
Target:  5'- cCUGGCAGCCgccAAGUGGAUCcggGGCAu -3'
miRNA:   3'- -GACCGUCGGgauUUCGUCUGGa--UUGU- -5'
33275 3' -52.4 NC_007605.1 + 52983 0.7 0.870704
Target:  5'- uCUGcGCccaaAGCCCUGAuggaAGACCUGGCAg -3'
miRNA:   3'- -GAC-CG----UCGGGAUUucg-UCUGGAUUGU- -5'
33275 3' -52.4 NC_007605.1 + 51705 0.73 0.759077
Target:  5'- uUGGCGGCCCUggccucggugaGAAGCucgcguagccacacGGCCUGGCGu -3'
miRNA:   3'- gACCGUCGGGA-----------UUUCGu-------------CUGGAUUGU- -5'
33275 3' -52.4 NC_007605.1 + 51447 0.7 0.885468
Target:  5'- -aGGUGGCCCcu-GGCAGGCCcaggGACu -3'
miRNA:   3'- gaCCGUCGGGauuUCGUCUGGa---UUGu -5'
33275 3' -52.4 NC_007605.1 + 50743 0.66 0.98106
Target:  5'- -aGGCAcccGCCCUGGGGUccGGCUUGGCc -3'
miRNA:   3'- gaCCGU---CGGGAUUUCGu-CUGGAUUGu -5'
33275 3' -52.4 NC_007605.1 + 48990 0.7 0.885468
Target:  5'- uCUGGCAGCCCaccgccGCAGAgCCgcaguuggAGCAg -3'
miRNA:   3'- -GACCGUCGGGauuu--CGUCU-GGa-------UUGU- -5'
33275 3' -52.4 NC_007605.1 + 48850 0.76 0.546647
Target:  5'- gCUGGCGGCCCcGAauccgGGCAGugCUGccGCAc -3'
miRNA:   3'- -GACCGUCGGGaUU-----UCGUCugGAU--UGU- -5'
33275 3' -52.4 NC_007605.1 + 47515 0.75 0.613699
Target:  5'- gCUGGCugucacggccguGGCCCUgcuccugauguuucuGAGGUGGACCUGACGu -3'
miRNA:   3'- -GACCG------------UCGGGA---------------UUUCGUCUGGAUUGU- -5'
33275 3' -52.4 NC_007605.1 + 36182 1.09 0.00574
Target:  5'- cCUGGCAGCCCUAAAGCAGACCUAACAu -3'
miRNA:   3'- -GACCGUCGGGAUUUCGUCUGGAUUGU- -5'
33275 3' -52.4 NC_007605.1 + 35237 0.67 0.964465
Target:  5'- cCUGGCGGCCC---AGCccGACCcccgGGCGc -3'
miRNA:   3'- -GACCGUCGGGauuUCGu-CUGGa---UUGU- -5'
33275 3' -52.4 NC_007605.1 + 33800 0.71 0.821135
Target:  5'- -aGGCGGCCCUAcuGgGGACCg---- -3'
miRNA:   3'- gaCCGUCGGGAUuuCgUCUGGauugu -5'
33275 3' -52.4 NC_007605.1 + 33527 0.66 0.98106
Target:  5'- cCUGGCugauGCaaCUUGAGGCAG-CCUAAUc -3'
miRNA:   3'- -GACCGu---CG--GGAUUUCGUCuGGAUUGu -5'
33275 3' -52.4 NC_007605.1 + 32527 0.69 0.899272
Target:  5'- -cGGCcuuagaucuGGCUCUuuGGCAGGCCUgguGACAg -3'
miRNA:   3'- gaCCG---------UCGGGAuuUCGUCUGGA---UUGU- -5'
33275 3' -52.4 NC_007605.1 + 32361 0.72 0.793759
Target:  5'- -aGGCAGCCCcAAAGCGGguGCagUAACAg -3'
miRNA:   3'- gaCCGUCGGGaUUUCGUC--UGg-AUUGU- -5'
33275 3' -52.4 NC_007605.1 + 32168 0.67 0.964465
Target:  5'- cCUGGCGGCCC---AGCccGACCcccgGGCGc -3'
miRNA:   3'- -GACCGUCGGGauuUCGu-CUGGa---UUGU- -5'
33275 3' -52.4 NC_007605.1 + 30731 0.71 0.821135
Target:  5'- -aGGCGGCCCUAcuGgGGACCg---- -3'
miRNA:   3'- gaCCGUCGGGAUuuCgUCUGGauugu -5'
33275 3' -52.4 NC_007605.1 + 30458 0.66 0.98106
Target:  5'- cCUGGCugauGCaaCUUGAGGCAG-CCUAAUc -3'
miRNA:   3'- -GACCGu---CG--GGAUUUCGUCuGGAUUGu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.