miRNA display CGI


Results 41 - 60 of 95 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33275 3' -52.4 NC_007605.1 + 62723 0.7 0.855025
Target:  5'- -aGGCGGCCCUGGAc--GugCUGGCAu -3'
miRNA:   3'- gaCCGUCGGGAUUUcguCugGAUUGU- -5'
33275 3' -52.4 NC_007605.1 + 127517 0.66 0.98106
Target:  5'- aUGGCaggugcacGGCCCcgugaaUGAAGCGGGCCccgGGCu -3'
miRNA:   3'- gACCG--------UCGGG------AUUUCGUCUGGa--UUGu -5'
33275 3' -52.4 NC_007605.1 + 9528 0.7 0.862976
Target:  5'- gUGGCuuucaUCCUGGAGCAGACUUuGCAg -3'
miRNA:   3'- gACCGuc---GGGAUUUCGUCUGGAuUGU- -5'
33275 3' -52.4 NC_007605.1 + 60327 0.68 0.948474
Target:  5'- -gGaGCAcGCCCUGGAGCuGggauacaGCCUGACGg -3'
miRNA:   3'- gaC-CGU-CGGGAUUUCGuC-------UGGAUUGU- -5'
33275 3' -52.4 NC_007605.1 + 61362 0.66 0.98106
Target:  5'- -cGGCGGCCCc---GCGGACa-GACGu -3'
miRNA:   3'- gaCCGUCGGGauuuCGUCUGgaUUGU- -5'
33275 3' -52.4 NC_007605.1 + 84941 0.68 0.939663
Target:  5'- -gGGUcaGGUCCUGGGGCAGGCagUAGCu -3'
miRNA:   3'- gaCCG--UCGGGAUUUCGUCUGg-AUUGu -5'
33275 3' -52.4 NC_007605.1 + 21251 0.66 0.98106
Target:  5'- cCUGGCugauGCaaCUUGAGGCAG-CCUAAUc -3'
miRNA:   3'- -GACCGu---CG--GGAUUUCGUCuGGAUUGu -5'
33275 3' -52.4 NC_007605.1 + 33527 0.66 0.98106
Target:  5'- cCUGGCugauGCaaCUUGAGGCAG-CCUAAUc -3'
miRNA:   3'- -GACCGu---CG--GGAUUUCGUCuGGAUUGu -5'
33275 3' -52.4 NC_007605.1 + 26030 0.67 0.964465
Target:  5'- cCUGGCGGCCC---AGCccGACCcccgGGCGc -3'
miRNA:   3'- -GACCGUCGGGauuUCGu-CUGGa---UUGU- -5'
33275 3' -52.4 NC_007605.1 + 144496 0.72 0.764979
Target:  5'- aCUGGCAGCC---GAGCAGAuUCUAAUg -3'
miRNA:   3'- -GACCGUCGGgauUUCGUCU-GGAUUGu -5'
33275 3' -52.4 NC_007605.1 + 29292 0.72 0.793759
Target:  5'- -aGGCAGCCCcAAAGCGGguGCagUAACAg -3'
miRNA:   3'- gaCCGUCGGGaUUUCGUC--UGg-AUUGU- -5'
33275 3' -52.4 NC_007605.1 + 19893 0.67 0.964465
Target:  5'- cCUGGCGGCCC---AGCccGACCcccgGGCGc -3'
miRNA:   3'- -GACCGUCGGGauuUCGu-CUGGa---UUGU- -5'
33275 3' -52.4 NC_007605.1 + 16824 0.67 0.964465
Target:  5'- cCUGGCGGCCC---AGCccGACCcccgGGCGc -3'
miRNA:   3'- -GACCGUCGGGauuUCGu-CUGGa---UUGU- -5'
33275 3' -52.4 NC_007605.1 + 13755 0.67 0.964465
Target:  5'- cCUGGCGGCCC---AGCccGACCcccgGGCGc -3'
miRNA:   3'- -GACCGUCGGGauuUCGu-CUGGa---UUGU- -5'
33275 3' -52.4 NC_007605.1 + 158807 0.67 0.964465
Target:  5'- -aGGUaaAGCCCauccgGGGGCAgGGCCUGGCc -3'
miRNA:   3'- gaCCG--UCGGGa----UUUCGU-CUGGAUUGu -5'
33275 3' -52.4 NC_007605.1 + 126751 0.67 0.964465
Target:  5'- -gGGCAGacaUUGGAGCAGcACCUGAUc -3'
miRNA:   3'- gaCCGUCgg-GAUUUCGUC-UGGAUUGu -5'
33275 3' -52.4 NC_007605.1 + 106477 0.67 0.95717
Target:  5'- -cGGCGGCU----GGCAGGCCU-GCAc -3'
miRNA:   3'- gaCCGUCGGgauuUCGUCUGGAuUGU- -5'
33275 3' -52.4 NC_007605.1 + 161408 0.71 0.84933
Target:  5'- aCUGGCAGCgugacaaCCggacgggccuuGCAGACCUGGCu -3'
miRNA:   3'- -GACCGUCG-------GGauuu-------CGUCUGGAUUGu -5'
33275 3' -52.4 NC_007605.1 + 84057 0.72 0.803053
Target:  5'- uCUGGCcuauGCCCgcGGGCAGGCCaugAAUAu -3'
miRNA:   3'- -GACCGu---CGGGauUUCGUCUGGa--UUGU- -5'
33275 3' -52.4 NC_007605.1 + 32361 0.72 0.793759
Target:  5'- -aGGCAGCCCcAAAGCGGguGCagUAACAg -3'
miRNA:   3'- gaCCGUCGGGaUUUCGUC--UGg-AUUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.