miRNA display CGI


Results 61 - 80 of 95 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33275 3' -52.4 NC_007605.1 + 23154 0.72 0.793759
Target:  5'- -aGGCAGCCCcAAAGCGGguGCagUAACAg -3'
miRNA:   3'- gaCCGUCGGGaUUUCGUC--UGg-AUUGU- -5'
33275 3' -52.4 NC_007605.1 + 144496 0.72 0.764979
Target:  5'- aCUGGCAGCC---GAGCAGAuUCUAAUg -3'
miRNA:   3'- -GACCGUCGGgauUUCGUCU-GGAUUGu -5'
33275 3' -52.4 NC_007605.1 + 51705 0.73 0.759077
Target:  5'- uUGGCGGCCCUggccucggugaGAAGCucgcguagccacacGGCCUGGCGu -3'
miRNA:   3'- gACCGUCGGGA-----------UUUCGu-------------CUGGAUUGU- -5'
33275 3' -52.4 NC_007605.1 + 65130 0.73 0.755119
Target:  5'- -cGGCAGCCCcuucauccuuuUGAAGgAGGCCU-GCAa -3'
miRNA:   3'- gaCCGUCGGG-----------AUUUCgUCUGGAuUGU- -5'
33275 3' -52.4 NC_007605.1 + 106477 0.67 0.95717
Target:  5'- -cGGCGGCU----GGCAGGCCU-GCAc -3'
miRNA:   3'- gaCCGUCGGgauuUCGUCUGGAuUGU- -5'
33275 3' -52.4 NC_007605.1 + 126751 0.67 0.964465
Target:  5'- -gGGCAGacaUUGGAGCAGcACCUGAUc -3'
miRNA:   3'- gaCCGUCgg-GAUUUCGUC-UGGAUUGu -5'
33275 3' -52.4 NC_007605.1 + 158807 0.67 0.964465
Target:  5'- -aGGUaaAGCCCauccgGGGGCAgGGCCUGGCc -3'
miRNA:   3'- gaCCG--UCGGGa----UUUCGU-CUGGAUUGu -5'
33275 3' -52.4 NC_007605.1 + 84359 0.66 0.983132
Target:  5'- -aGGCAGCCagaacAGAGCAGccaagagccacGCCUGAa- -3'
miRNA:   3'- gaCCGUCGGga---UUUCGUC-----------UGGAUUgu -5'
33275 3' -52.4 NC_007605.1 + 55215 0.66 0.983132
Target:  5'- -gGGCAuCCuCUGGAGCcuGACCUGugAu -3'
miRNA:   3'- gaCCGUcGG-GAUUUCGu-CUGGAUugU- -5'
33275 3' -52.4 NC_007605.1 + 10575 0.66 0.982933
Target:  5'- -gGGCccaGGCCUUGcaGGGCAGACgguuaggCUGACAa -3'
miRNA:   3'- gaCCG---UCGGGAU--UUCGUCUG-------GAUUGU- -5'
33275 3' -52.4 NC_007605.1 + 133685 0.66 0.98106
Target:  5'- -aGGCuGCCCUGAuccucucGguGGCCUAc-- -3'
miRNA:   3'- gaCCGuCGGGAUUu------CguCUGGAUugu -5'
33275 3' -52.4 NC_007605.1 + 61028 0.66 0.98106
Target:  5'- -gGGCAGCUCguUGGAGaGGACCcGGCGa -3'
miRNA:   3'- gaCCGUCGGG--AUUUCgUCUGGaUUGU- -5'
33275 3' -52.4 NC_007605.1 + 55043 0.66 0.98106
Target:  5'- gUGGCGGgCUUAAAGCcuucGGCCUccaGGCGc -3'
miRNA:   3'- gACCGUCgGGAUUUCGu---CUGGA---UUGU- -5'
33275 3' -52.4 NC_007605.1 + 150624 0.66 0.979038
Target:  5'- -gGGCGGCCCgggcuccagcagaacGucGCAGACCcAGCc -3'
miRNA:   3'- gaCCGUCGGGa--------------UuuCGUCUGGaUUGu -5'
33275 3' -52.4 NC_007605.1 + 81496 0.66 0.978804
Target:  5'- cCUGGgAGCcaucCCUGAcacaggcugcggGGCAGGCCUuuGCAc -3'
miRNA:   3'- -GACCgUCG----GGAUU------------UCGUCUGGAu-UGU- -5'
33275 3' -52.4 NC_007605.1 + 11260 0.66 0.978804
Target:  5'- uUGGCGGcCCCUAAGGgGGGgaCUAAg- -3'
miRNA:   3'- gACCGUC-GGGAUUUCgUCUg-GAUUgu -5'
33275 3' -52.4 NC_007605.1 + 22961 0.67 0.964465
Target:  5'- cCUGGCGGCCC---AGCccGACCcccgGGCGc -3'
miRNA:   3'- -GACCGUCGGGauuUCGu-CUGGa---UUGU- -5'
33275 3' -52.4 NC_007605.1 + 19893 0.67 0.964465
Target:  5'- cCUGGCGGCCC---AGCccGACCcccgGGCGc -3'
miRNA:   3'- -GACCGUCGGGauuUCGu-CUGGa---UUGU- -5'
33275 3' -52.4 NC_007605.1 + 16824 0.67 0.964465
Target:  5'- cCUGGCGGCCC---AGCccGACCcccgGGCGc -3'
miRNA:   3'- -GACCGUCGGGauuUCGu-CUGGa---UUGU- -5'
33275 3' -52.4 NC_007605.1 + 13755 0.67 0.964465
Target:  5'- cCUGGCGGCCC---AGCccGACCcccgGGCGc -3'
miRNA:   3'- -GACCGUCGGGauuUCGu-CUGGa---UUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.