miRNA display CGI


Results 81 - 95 of 95 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33275 3' -52.4 NC_007605.1 + 55215 0.66 0.983132
Target:  5'- -gGGCAuCCuCUGGAGCcuGACCUGugAu -3'
miRNA:   3'- gaCCGUcGG-GAUUUCGu-CUGGAUugU- -5'
33275 3' -52.4 NC_007605.1 + 84359 0.66 0.983132
Target:  5'- -aGGCAGCCagaacAGAGCAGccaagagccacGCCUGAa- -3'
miRNA:   3'- gaCCGUCGGga---UUUCGUC-----------UGGAUUgu -5'
33275 3' -52.4 NC_007605.1 + 85456 0.66 0.978804
Target:  5'- gCUGGCAGCCUUcaccAGGGUccGGcACCagUGACAa -3'
miRNA:   3'- -GACCGUCGGGA----UUUCG--UC-UGG--AUUGU- -5'
33275 3' -52.4 NC_007605.1 + 54523 0.67 0.967765
Target:  5'- -cGGUAGCCgCggggguGGCGGGCCaAGCGu -3'
miRNA:   3'- gaCCGUCGG-Gauu---UCGUCUGGaUUGU- -5'
33275 3' -52.4 NC_007605.1 + 126751 0.67 0.964465
Target:  5'- -gGGCAGacaUUGGAGCAGcACCUGAUc -3'
miRNA:   3'- gaCCGUCgg-GAUUUCGUC-UGGAUUGu -5'
33275 3' -52.4 NC_007605.1 + 158807 0.67 0.964465
Target:  5'- -aGGUaaAGCCCauccgGGGGCAgGGCCUGGCc -3'
miRNA:   3'- gaCCG--UCGGGa----UUUCGU-CUGGAUUGu -5'
33275 3' -52.4 NC_007605.1 + 13755 0.67 0.964465
Target:  5'- cCUGGCGGCCC---AGCccGACCcccgGGCGc -3'
miRNA:   3'- -GACCGUCGGGauuUCGu-CUGGa---UUGU- -5'
33275 3' -52.4 NC_007605.1 + 16824 0.67 0.964465
Target:  5'- cCUGGCGGCCC---AGCccGACCcccgGGCGc -3'
miRNA:   3'- -GACCGUCGGGauuUCGu-CUGGa---UUGU- -5'
33275 3' -52.4 NC_007605.1 + 19893 0.67 0.964465
Target:  5'- cCUGGCGGCCC---AGCccGACCcccgGGCGc -3'
miRNA:   3'- -GACCGUCGGGauuUCGu-CUGGa---UUGU- -5'
33275 3' -52.4 NC_007605.1 + 22961 0.67 0.964465
Target:  5'- cCUGGCGGCCC---AGCccGACCcccgGGCGc -3'
miRNA:   3'- -GACCGUCGGGauuUCGu-CUGGa---UUGU- -5'
33275 3' -52.4 NC_007605.1 + 26030 0.67 0.964465
Target:  5'- cCUGGCGGCCC---AGCccGACCcccgGGCGc -3'
miRNA:   3'- -GACCGUCGGGauuUCGu-CUGGa---UUGU- -5'
33275 3' -52.4 NC_007605.1 + 29099 0.67 0.964465
Target:  5'- cCUGGCGGCCC---AGCccGACCcccgGGCGc -3'
miRNA:   3'- -GACCGUCGGGauuUCGu-CUGGa---UUGU- -5'
33275 3' -52.4 NC_007605.1 + 32168 0.67 0.964465
Target:  5'- cCUGGCGGCCC---AGCccGACCcccgGGCGc -3'
miRNA:   3'- -GACCGUCGGGauuUCGu-CUGGa---UUGU- -5'
33275 3' -52.4 NC_007605.1 + 35237 0.67 0.964465
Target:  5'- cCUGGCGGCCC---AGCccGACCcccgGGCGc -3'
miRNA:   3'- -GACCGUCGGGauuUCGu-CUGGa---UUGU- -5'
33275 3' -52.4 NC_007605.1 + 150889 0.66 0.983132
Target:  5'- cCUGGuCAGCCgCagagGAAGCAuGACCUugggguggGACGg -3'
miRNA:   3'- -GACC-GUCGG-Ga---UUUCGU-CUGGA--------UUGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.