miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33275 5' -49.6 NC_007605.1 + 44934 0.66 0.997068
Target:  5'- -gUGCACAUCUGcAGcCAGGCccuuaGCCu -3'
miRNA:   3'- ugACGUGUAGAUaUUuGUCCGa----CGGu -5'
33275 5' -49.6 NC_007605.1 + 163650 0.66 0.996526
Target:  5'- cGCUGCGCGUCcgacggGUGGGCAagcuggugGaGCUGCUg -3'
miRNA:   3'- -UGACGUGUAGa-----UAUUUGU--------C-CGACGGu -5'
33275 5' -49.6 NC_007605.1 + 105893 0.66 0.995195
Target:  5'- cCUGCcCAUCcauUAUGuggGACGGGCgagGCCGg -3'
miRNA:   3'- uGACGuGUAG---AUAU---UUGUCCGa--CGGU- -5'
33275 5' -49.6 NC_007605.1 + 149738 0.67 0.994724
Target:  5'- -aUGUACcaGguaaacuucccuuucUCUAUGAACAGGCUGCgCGg -3'
miRNA:   3'- ugACGUG--U---------------AGAUAUUUGUCCGACG-GU- -5'
33275 5' -49.6 NC_007605.1 + 48789 0.67 0.990012
Target:  5'- aACUGCGgcUCUGc-GGCgguGGGCUGCCAg -3'
miRNA:   3'- -UGACGUguAGAUauUUG---UCCGACGGU- -5'
33275 5' -49.6 NC_007605.1 + 121126 0.67 0.990012
Target:  5'- aACUGCACcUCUGUGuugcugguGGCuGGgUGCCc -3'
miRNA:   3'- -UGACGUGuAGAUAU--------UUGuCCgACGGu -5'
33275 5' -49.6 NC_007605.1 + 63845 0.68 0.988582
Target:  5'- --cGCGCAUCggcgGGGCAcGGCUGCa- -3'
miRNA:   3'- ugaCGUGUAGaua-UUUGU-CCGACGgu -5'
33275 5' -49.6 NC_007605.1 + 153815 0.68 0.988582
Target:  5'- cCUGCAaGUUUGUGcaGACAcGCUGCCGg -3'
miRNA:   3'- uGACGUgUAGAUAU--UUGUcCGACGGU- -5'
33275 5' -49.6 NC_007605.1 + 161658 0.68 0.986997
Target:  5'- uCUGCuugGCGUaagu-GACAGGUUGCCAg -3'
miRNA:   3'- uGACG---UGUAgauauUUGUCCGACGGU- -5'
33275 5' -49.6 NC_007605.1 + 86205 0.7 0.965263
Target:  5'- uGCaGCGCAUCaggcgaaggcggagaAGACGGGCUGCCu -3'
miRNA:   3'- -UGaCGUGUAGaua------------UUUGUCCGACGGu -5'
33275 5' -49.6 NC_007605.1 + 129008 0.7 0.96422
Target:  5'- cCUGUccacGCAUUUGUAGGCGGGgagaUGCCAc -3'
miRNA:   3'- uGACG----UGUAGAUAUUUGUCCg---ACGGU- -5'
33275 5' -49.6 NC_007605.1 + 158597 0.7 0.960584
Target:  5'- gGCUGCACcgUgGUGGcgggggguGCGGGCUGCUc -3'
miRNA:   3'- -UGACGUGuaGaUAUU--------UGUCCGACGGu -5'
33275 5' -49.6 NC_007605.1 + 123887 0.71 0.932878
Target:  5'- cAUUGUACAUCUuuu-GCAGGCUuuccacgGCCAc -3'
miRNA:   3'- -UGACGUGUAGAuauuUGUCCGA-------CGGU- -5'
33275 5' -49.6 NC_007605.1 + 90129 0.73 0.874785
Target:  5'- uGCUGCcaaauCAUCUGaaaauGACAGGCUGCg- -3'
miRNA:   3'- -UGACGu----GUAGAUau---UUGUCCGACGgu -5'
33275 5' -49.6 NC_007605.1 + 3320 0.75 0.806235
Target:  5'- --cGCGCAUgCgauauGGCAGGCUGCCAg -3'
miRNA:   3'- ugaCGUGUA-Gauau-UUGUCCGACGGU- -5'
33275 5' -49.6 NC_007605.1 + 36147 1.09 0.011179
Target:  5'- uACUGCACAUCUAUAAACAGGCUGCCAc -3'
miRNA:   3'- -UGACGUGUAGAUAUUUGUCCGACGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.