miRNA display CGI


Results 81 - 100 of 293 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33276 3' -63.1 NC_007605.1 + 141831 0.66 0.666515
Target:  5'- gGGUccGGGGUuccggcccuggagcuCGGgGGGCgGCcgggugGCCCACCg -3'
miRNA:   3'- -CCA--CCCCG---------------GUCgCCUGgCG------UGGGUGG- -5'
33276 3' -63.1 NC_007605.1 + 141933 0.66 0.666515
Target:  5'- gGGUccGGGGUuccggcccuggagcuCGGgGGGCgGCcgggugGCCCACCg -3'
miRNA:   3'- -CCA--CCCCG---------------GUCgCCUGgCG------UGGGUGG- -5'
33276 3' -63.1 NC_007605.1 + 141016 0.66 0.666515
Target:  5'- gGGUccGGGGUuccggcccuggagcuCGGgGGGCgGCcgggugGCCCACCg -3'
miRNA:   3'- -CCA--CCCCG---------------GUCgCCUGgCG------UGGGUGG- -5'
33276 3' -63.1 NC_007605.1 + 31565 0.66 0.662689
Target:  5'- --aGGGGCCucuuUGGGCCcucaaguccaGC-CCCACCg -3'
miRNA:   3'- ccaCCCCGGuc--GCCUGG----------CGuGGGUGG- -5'
33276 3' -63.1 NC_007605.1 + 28496 0.66 0.662689
Target:  5'- --aGGGGCCucuuUGGGCCcucaaguccaGC-CCCACCg -3'
miRNA:   3'- ccaCCCCGGuc--GCCUGG----------CGuGGGUGG- -5'
33276 3' -63.1 NC_007605.1 + 34634 0.66 0.662689
Target:  5'- --aGGGGCCucuuUGGGCCcucaaguccaGC-CCCACCg -3'
miRNA:   3'- ccaCCCCGGuc--GCCUGG----------CGuGGGUGG- -5'
33276 3' -63.1 NC_007605.1 + 19289 0.66 0.662689
Target:  5'- --aGGGGCCucuuUGGGCCcucaaguccaGC-CCCACCg -3'
miRNA:   3'- ccaCCCCGGuc--GCCUGG----------CGuGGGUGG- -5'
33276 3' -63.1 NC_007605.1 + 140812 0.66 0.666515
Target:  5'- gGGUccGGGGUuccggcccuggagcuCGGgGGGCgGCcgggugGCCCACCg -3'
miRNA:   3'- -CCA--CCCCG---------------GUCgCCUGgCG------UGGGUGG- -5'
33276 3' -63.1 NC_007605.1 + 140914 0.66 0.666515
Target:  5'- gGGUccGGGGUuccggcccuggagcuCGGgGGGCgGCcgggugGCCCACCg -3'
miRNA:   3'- -CCA--CCCCG---------------GUCgCCUGgCG------UGGGUGG- -5'
33276 3' -63.1 NC_007605.1 + 22358 0.66 0.662689
Target:  5'- --aGGGGCCucuuUGGGCCcucaaguccaGC-CCCACCg -3'
miRNA:   3'- ccaCCCCGGuc--GCCUGG----------CGuGGGUGG- -5'
33276 3' -63.1 NC_007605.1 + 25427 0.66 0.662689
Target:  5'- --aGGGGCCucuuUGGGCCcucaaguccaGC-CCCACCg -3'
miRNA:   3'- ccaCCCCGGuc--GCCUGG----------CGuGGGUGG- -5'
33276 3' -63.1 NC_007605.1 + 53137 0.67 0.605126
Target:  5'- --aGGGuGCCGGCGuauuucgccGGCC-CugCCGCCg -3'
miRNA:   3'- ccaCCC-CGGUCGC---------CUGGcGugGGUGG- -5'
33276 3' -63.1 NC_007605.1 + 153542 0.67 0.608959
Target:  5'- uGGaaGGGCCGGUGGgagaggaggcugGCCGCcuccuuuacccgggcAUCCGCCa -3'
miRNA:   3'- -CCacCCCGGUCGCC------------UGGCG---------------UGGGUGG- -5'
33276 3' -63.1 NC_007605.1 + 155981 0.67 0.614713
Target:  5'- aGGgGGGGCUgaGGCcc-CCGCACauCCACCa -3'
miRNA:   3'- -CCaCCCCGG--UCGccuGGCGUG--GGUGG- -5'
33276 3' -63.1 NC_007605.1 + 104514 0.67 0.599382
Target:  5'- cGGUGGGGCUgagaccaugcucaguGGCcgucuggcaggGGGCCGgGCgCGCUc -3'
miRNA:   3'- -CCACCCCGG---------------UCG-----------CCUGGCgUGgGUGG- -5'
33276 3' -63.1 NC_007605.1 + 88509 0.67 0.567016
Target:  5'- uGG-GGGGCCGGCGGcuCCugGUAUCC-CUg -3'
miRNA:   3'- -CCaCCCCGGUCGCCu-GG--CGUGGGuGG- -5'
33276 3' -63.1 NC_007605.1 + 90432 0.67 0.567016
Target:  5'- aGGaGGGGCggCAGCGGACgGUgggGCUCAUg -3'
miRNA:   3'- -CCaCCCCG--GUCGCCUGgCG---UGGGUGg -5'
33276 3' -63.1 NC_007605.1 + 23223 0.67 0.586013
Target:  5'- --aGGGGCgGGaggGGGCUGgGCCuCACCc -3'
miRNA:   3'- ccaCCCCGgUCg--CCUGGCgUGG-GUGG- -5'
33276 3' -63.1 NC_007605.1 + 26292 0.67 0.586013
Target:  5'- --aGGGGCgGGaggGGGCUGgGCCuCACCc -3'
miRNA:   3'- ccaCCCCGgUCg--CCUGGCgUGG-GUGG- -5'
33276 3' -63.1 NC_007605.1 + 32430 0.67 0.586013
Target:  5'- --aGGGGCgGGaggGGGCUGgGCCuCACCc -3'
miRNA:   3'- ccaCCCCGgUCg--CCUGGCgUGG-GUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.