miRNA display CGI


Results 101 - 120 of 293 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33276 3' -63.1 NC_007605.1 + 136631 0.67 0.594602
Target:  5'- uGGgaaaagGGGGgCAGCgGGGCCGCGuaggguagcggggUCUGCCu -3'
miRNA:   3'- -CCa-----CCCCgGUCG-CCUGGCGU-------------GGGUGG- -5'
33276 3' -63.1 NC_007605.1 + 59391 0.67 0.605126
Target:  5'- aGG-GGGGCgacaaGGCGuccuccCCGC-CCCACCg -3'
miRNA:   3'- -CCaCCCCGg----UCGCcu----GGCGuGGGUGG- -5'
33276 3' -63.1 NC_007605.1 + 163206 0.67 0.595558
Target:  5'- aGGaGGGGaCCuG-GGACCcCugCCGCCg -3'
miRNA:   3'- -CCaCCCC-GGuCgCCUGGcGugGGUGG- -5'
33276 3' -63.1 NC_007605.1 + 151142 0.67 0.595558
Target:  5'- uGUGGGGaUCGGCaaaGAUUGCGCCCAg- -3'
miRNA:   3'- cCACCCC-GGUCGc--CUGGCGUGGGUgg -5'
33276 3' -63.1 NC_007605.1 + 1833 0.67 0.605126
Target:  5'- -aUGGGGUCGGUGGG-CGCuCCuCACUu -3'
miRNA:   3'- ccACCCCGGUCGCCUgGCGuGG-GUGG- -5'
33276 3' -63.1 NC_007605.1 + 23223 0.67 0.586013
Target:  5'- --aGGGGCgGGaggGGGCUGgGCCuCACCc -3'
miRNA:   3'- ccaCCCCGgUCg--CCUGGCgUGG-GUGG- -5'
33276 3' -63.1 NC_007605.1 + 62183 0.67 0.614713
Target:  5'- --cGGaGGCCAGCGGGggacaaaCGC-CCC-CCg -3'
miRNA:   3'- ccaCC-CCGGUCGCCUg------GCGuGGGuGG- -5'
33276 3' -63.1 NC_007605.1 + 88509 0.67 0.567016
Target:  5'- uGG-GGGGCCGGCGGcuCCugGUAUCC-CUg -3'
miRNA:   3'- -CCaCCCCGGUCGCCu-GG--CGUGGGuGG- -5'
33276 3' -63.1 NC_007605.1 + 32430 0.67 0.586013
Target:  5'- --aGGGGCgGGaggGGGCUGgGCCuCACCc -3'
miRNA:   3'- ccaCCCCGgUCg--CCUGGCgUGG-GUGG- -5'
33276 3' -63.1 NC_007605.1 + 169466 0.67 0.567016
Target:  5'- -cUGGGGCaUGGgGGGCCGCGCauuCCu -3'
miRNA:   3'- ccACCCCG-GUCgCCUGGCGUGgguGG- -5'
33276 3' -63.1 NC_007605.1 + 60275 0.67 0.594602
Target:  5'- gGGUGGccgugucGGCC-GUGG-CCaGgGCCCACCu -3'
miRNA:   3'- -CCACC-------CCGGuCGCCuGG-CgUGGGUGG- -5'
33276 3' -63.1 NC_007605.1 + 58117 0.67 0.586013
Target:  5'- --cGGGGCC-GCGGagGCCGgGgCCGCa -3'
miRNA:   3'- ccaCCCCGGuCGCC--UGGCgUgGGUGg -5'
33276 3' -63.1 NC_007605.1 + 58087 0.67 0.586013
Target:  5'- --cGGGGCC-GCGGagGCCGgGgCCGCg -3'
miRNA:   3'- ccaCCCCGGuCGCC--UGGCgUgGGUGg -5'
33276 3' -63.1 NC_007605.1 + 58057 0.67 0.586013
Target:  5'- --cGGGGCC-GCGGagGCCGgGgCCGCg -3'
miRNA:   3'- ccaCCCCGGuCGCC--UGGCgUgGGUGg -5'
33276 3' -63.1 NC_007605.1 + 61249 0.67 0.586013
Target:  5'- aGGgGaGGGCCGGagccgGGGCCGgGgCCUGCCa -3'
miRNA:   3'- -CCaC-CCCGGUCg----CCUGGCgU-GGGUGG- -5'
33276 3' -63.1 NC_007605.1 + 171236 0.67 0.576497
Target:  5'- cGGgGGGGUCGGgGGgcGCCGCGCgggcgcaGCCa -3'
miRNA:   3'- -CCaCCCCGGUCgCC--UGGCGUGgg-----UGG- -5'
33276 3' -63.1 NC_007605.1 + 170698 0.67 0.576497
Target:  5'- cGGgGGGGUCGGgGGgcGCCGCGCgggcgcaGCCa -3'
miRNA:   3'- -CCaCCCCGGUCgCC--UGGCGUGgg-----UGG- -5'
33276 3' -63.1 NC_007605.1 + 170176 0.67 0.576497
Target:  5'- cGGgGGGGUCGGgGGgcGCCGCGCgggcgcaGCCa -3'
miRNA:   3'- -CCaCCCCGGUCgCC--UGGCGUGgg-----UGG- -5'
33276 3' -63.1 NC_007605.1 + 160603 0.67 0.576497
Target:  5'- aGGaUGGccuccagcucGGCCAGCaGGCCggcguuGCGCaCCACCg -3'
miRNA:   3'- -CC-ACC----------CCGGUCGcCUGG------CGUG-GGUGG- -5'
33276 3' -63.1 NC_007605.1 + 59129 0.67 0.575547
Target:  5'- --cGGGGCCGGUuccccgGGugCGCuggcuuuGCCC-CCa -3'
miRNA:   3'- ccaCCCCGGUCG------CCugGCG-------UGGGuGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.