miRNA display CGI


Results 81 - 100 of 293 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33276 3' -63.1 NC_007605.1 + 40413 0.7 0.3914
Target:  5'- ---cGGGCCGGCugggaGGugUGCACCCcCCg -3'
miRNA:   3'- ccacCCCGGUCG-----CCugGCGUGGGuGG- -5'
33276 3' -63.1 NC_007605.1 + 170828 0.7 0.406576
Target:  5'- ---cGGGCCcGCGGaccccgaccccccGCCGCccGCCCGCCg -3'
miRNA:   3'- ccacCCCGGuCGCC-------------UGGCG--UGGGUGG- -5'
33276 3' -63.1 NC_007605.1 + 150405 0.7 0.407385
Target:  5'- -uUGGGGCC-GC--ACCGuCGCCCGCCc -3'
miRNA:   3'- ccACCCCGGuCGccUGGC-GUGGGUGG- -5'
33276 3' -63.1 NC_007605.1 + 5002 0.69 0.481399
Target:  5'- -aUGGGGCCAGgGacucugcccuggcaGGCCGUG-CCACCg -3'
miRNA:   3'- ccACCCCGGUCgC--------------CUGGCGUgGGUGG- -5'
33276 3' -63.1 NC_007605.1 + 60955 0.69 0.449078
Target:  5'- aGGgcgGGGGCCccuGgGGGCUGUcguCCCACg -3'
miRNA:   3'- -CCa--CCCCGGu--CgCCUGGCGu--GGGUGg -5'
33276 3' -63.1 NC_007605.1 + 2922 0.69 0.456831
Target:  5'- -uUGGGGCCauuccagccauggAGCGGACUGacgGCCCcuCCg -3'
miRNA:   3'- ccACCCCGG-------------UCGCCUGGCg--UGGGu-GG- -5'
33276 3' -63.1 NC_007605.1 + 151022 0.69 0.457697
Target:  5'- aGGcccgGGGGCUGGCGaGGCgGCGUCCGCg -3'
miRNA:   3'- -CCa---CCCCGGUCGC-CUGgCGUGGGUGg -5'
33276 3' -63.1 NC_007605.1 + 95086 0.69 0.466404
Target:  5'- gGGaUGGGGCCGGaggcaGGGCCGaaaACCgaggacgaggaaCACCc -3'
miRNA:   3'- -CC-ACCCCGGUCg----CCUGGCg--UGG------------GUGG- -5'
33276 3' -63.1 NC_007605.1 + 62373 0.69 0.457697
Target:  5'- aGGUGgccguuGGGCCAGa-GACCGCGagcaccucCCCGCUg -3'
miRNA:   3'- -CCAC------CCCGGUCgcCUGGCGU--------GGGUGG- -5'
33276 3' -63.1 NC_007605.1 + 50409 0.69 0.457697
Target:  5'- cGUGGccuuuGGCa--CGGGCCugGCACCCACCg -3'
miRNA:   3'- cCACC-----CCGgucGCCUGG--CGUGGGUGG- -5'
33276 3' -63.1 NC_007605.1 + 40091 0.69 0.484069
Target:  5'- gGGUGGGu---GCGGuCCGCuggcCCCACCc -3'
miRNA:   3'- -CCACCCcgguCGCCuGGCGu---GGGUGG- -5'
33276 3' -63.1 NC_007605.1 + 61099 0.69 0.457697
Target:  5'- --aGGGGCUguggacauaGGcCGGAuCCGCGCgCGCCg -3'
miRNA:   3'- ccaCCCCGG---------UC-GCCU-GGCGUGgGUGG- -5'
33276 3' -63.1 NC_007605.1 + 55930 0.68 0.511148
Target:  5'- --aGGGGCCAGgGGAuaCCGCucauaUCACUa -3'
miRNA:   3'- ccaCCCCGGUCgCCU--GGCGug---GGUGG- -5'
33276 3' -63.1 NC_007605.1 + 114569 0.68 0.502049
Target:  5'- uGUGGuGGCCAgGUGGACgcaGUGCCCGUCa -3'
miRNA:   3'- cCACC-CCGGU-CGCCUGg--CGUGGGUGG- -5'
33276 3' -63.1 NC_007605.1 + 91606 0.68 0.508411
Target:  5'- gGGUGGGGgaauauggguCUcucaucgcucucuuGGUGGACCGCugCUAUCc -3'
miRNA:   3'- -CCACCCC----------GG--------------UCGCCUGGCGugGGUGG- -5'
33276 3' -63.1 NC_007605.1 + 39806 0.68 0.511148
Target:  5'- gGGUGGGGgCguGGUccccuGGACCccaGC-CCCGCCg -3'
miRNA:   3'- -CCACCCCgG--UCG-----CCUGG---CGuGGGUGG- -5'
33276 3' -63.1 NC_007605.1 + 59187 0.68 0.511148
Target:  5'- cGGUGGGGCgGGgaGGACgccuUGuCGCCCcCCu -3'
miRNA:   3'- -CCACCCCGgUCg-CCUG----GC-GUGGGuGG- -5'
33276 3' -63.1 NC_007605.1 + 60641 0.68 0.520315
Target:  5'- aGGU-GGGCCaggcaAGCGGuggugcuuCCGcCGCCCGCUc -3'
miRNA:   3'- -CCAcCCCGG-----UCGCCu-------GGC-GUGGGUGG- -5'
33276 3' -63.1 NC_007605.1 + 152469 0.68 0.54818
Target:  5'- --gGGGGCCauGGUGGAgaGCAUCUugCu -3'
miRNA:   3'- ccaCCCCGG--UCGCCUggCGUGGGugG- -5'
33276 3' -63.1 NC_007605.1 + 105294 0.68 0.549118
Target:  5'- cGGUGaaGGGCCcgcagccagguuugcGCGucCCGCGCCUGCCc -3'
miRNA:   3'- -CCAC--CCCGGu--------------CGCcuGGCGUGGGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.