Results 61 - 80 of 293 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
33276 | 3' | -63.1 | NC_007605.1 | + | 160008 | 0.71 | 0.375829 |
Target: 5'- ---cGGGCCcG-GGACCGCGCCCuCCu -3' miRNA: 3'- ccacCCCGGuCgCCUGGCGUGGGuGG- -5' |
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33276 | 3' | -63.1 | NC_007605.1 | + | 135286 | 0.71 | 0.383562 |
Target: 5'- uGUGuGGGCgCAGCuuGGACUGCGCagggCGCCg -3' miRNA: 3'- cCAC-CCCG-GUCG--CCUGGCGUGg---GUGG- -5' |
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33276 | 3' | -63.1 | NC_007605.1 | + | 143228 | 0.7 | 0.3914 |
Target: 5'- ---cGGGCCGGCugggaGGugUGCACCCcCCg -3' miRNA: 3'- ccacCCCGGUCG-----CCugGCGUGGGuGG- -5' |
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33276 | 3' | -63.1 | NC_007605.1 | + | 40413 | 0.7 | 0.3914 |
Target: 5'- ---cGGGCCGGCugggaGGugUGCACCCcCCg -3' miRNA: 3'- ccacCCCGGUCG-----CCugGCGUGGGuGG- -5' |
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33276 | 3' | -63.1 | NC_007605.1 | + | 12323 | 0.7 | 0.396153 |
Target: 5'- aGGUuGGaGCCAGCGGGCacccgaggucccaGCACCCGguCCc -3' miRNA: 3'- -CCAcCC-CGGUCGCCUGg------------CGUGGGU--GG- -5' |
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33276 | 3' | -63.1 | NC_007605.1 | + | 15392 | 0.7 | 0.396153 |
Target: 5'- aGGUuGGaGCCAGCGGGCacccgaggucccaGCACCCGguCCc -3' miRNA: 3'- -CCAcCC-CGGUCGCCUGg------------CGUGGGU--GG- -5' |
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33276 | 3' | -63.1 | NC_007605.1 | + | 21530 | 0.7 | 0.396153 |
Target: 5'- aGGUuGGaGCCAGCGGGCacccgaggucccaGCACCCGguCCc -3' miRNA: 3'- -CCAcCC-CGGUCGCCUGg------------CGUGGGU--GG- -5' |
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33276 | 3' | -63.1 | NC_007605.1 | + | 18461 | 0.7 | 0.396153 |
Target: 5'- aGGUuGGaGCCAGCGGGCacccgaggucccaGCACCCGguCCc -3' miRNA: 3'- -CCAcCC-CGGUCGCCUGg------------CGUGGGU--GG- -5' |
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33276 | 3' | -63.1 | NC_007605.1 | + | 24599 | 0.7 | 0.396153 |
Target: 5'- aGGUuGGaGCCAGCGGGCacccgaggucccaGCACCCGguCCc -3' miRNA: 3'- -CCAcCC-CGGUCGCCUGg------------CGUGGGU--GG- -5' |
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33276 | 3' | -63.1 | NC_007605.1 | + | 27668 | 0.7 | 0.396153 |
Target: 5'- aGGUuGGaGCCAGCGGGCacccgaggucccaGCACCCGguCCc -3' miRNA: 3'- -CCAcCC-CGGUCGCCUGg------------CGUGGGU--GG- -5' |
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33276 | 3' | -63.1 | NC_007605.1 | + | 30737 | 0.7 | 0.396153 |
Target: 5'- aGGUuGGaGCCAGCGGGCacccgaggucccaGCACCCGguCCc -3' miRNA: 3'- -CCAcCC-CGGUCGCCUGg------------CGUGGGU--GG- -5' |
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33276 | 3' | -63.1 | NC_007605.1 | + | 33806 | 0.7 | 0.396153 |
Target: 5'- aGGUuGGaGCCAGCGGGCacccgaggucccaGCACCCGguCCc -3' miRNA: 3'- -CCAcCC-CGGUCGCCUGg------------CGUGGGU--GG- -5' |
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33276 | 3' | -63.1 | NC_007605.1 | + | 50552 | 0.7 | 0.399341 |
Target: 5'- --cGGGGgCAGCccACCGCGgcCCCGCCg -3' miRNA: 3'- ccaCCCCgGUCGccUGGCGU--GGGUGG- -5' |
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33276 | 3' | -63.1 | NC_007605.1 | + | 127309 | 0.7 | 0.399341 |
Target: 5'- --cGGGGCCcGCuucauucacgGGGCCguGCACCUGCCa -3' miRNA: 3'- ccaCCCCGGuCG----------CCUGG--CGUGGGUGG- -5' |
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33276 | 3' | -63.1 | NC_007605.1 | + | 100667 | 0.7 | 0.399341 |
Target: 5'- ---uGGGCCAGgGGAucgaggaagaccUCGCACuCCACCg -3' miRNA: 3'- ccacCCCGGUCgCCU------------GGCGUG-GGUGG- -5' |
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33276 | 3' | -63.1 | NC_007605.1 | + | 170828 | 0.7 | 0.406576 |
Target: 5'- ---cGGGCCcGCGGaccccgaccccccGCCGCccGCCCGCCg -3' miRNA: 3'- ccacCCCGGuCGCC-------------UGGCG--UGGGUGG- -5' |
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33276 | 3' | -63.1 | NC_007605.1 | + | 89610 | 0.7 | 0.407385 |
Target: 5'- aGGUGauGGCC-GCGG-CUGcCACCCGCCc -3' miRNA: 3'- -CCACc-CCGGuCGCCuGGC-GUGGGUGG- -5' |
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33276 | 3' | -63.1 | NC_007605.1 | + | 150405 | 0.7 | 0.407385 |
Target: 5'- -uUGGGGCC-GC--ACCGuCGCCCGCCc -3' miRNA: 3'- ccACCCCGGuCGccUGGC-GUGGGUGG- -5' |
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33276 | 3' | -63.1 | NC_007605.1 | + | 40315 | 0.7 | 0.423773 |
Target: 5'- cGGcgGGGGUgGGgGGugCGCuCCCagGCCg -3' miRNA: 3'- -CCa-CCCCGgUCgCCugGCGuGGG--UGG- -5' |
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33276 | 3' | -63.1 | NC_007605.1 | + | 150331 | 0.7 | 0.431276 |
Target: 5'- -cUGGGGCCgaugugcAGCGGuuUGUGCCCGCa -3' miRNA: 3'- ccACCCCGG-------UCGCCugGCGUGGGUGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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