miRNA display CGI


Results 81 - 100 of 293 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33276 3' -63.1 NC_007605.1 + 40241 0.7 0.44055
Target:  5'- --aGGGGuCCAGgGGgcaGCCGCgGCCCAgCg -3'
miRNA:   3'- ccaCCCC-GGUCgCC---UGGCG-UGGGUgG- -5'
33276 3' -63.1 NC_007605.1 + 92508 0.7 0.44055
Target:  5'- aGGUGcuGGGC--GUGGACCGCGCggCCAUCa -3'
miRNA:   3'- -CCAC--CCCGguCGCCUGGCGUG--GGUGG- -5'
33276 3' -63.1 NC_007605.1 + 87758 0.7 0.44055
Target:  5'- cGUGGGGCCuccugccGCGGggccuccuGCCGCGgggccuCCUGCCg -3'
miRNA:   3'- cCACCCCGGu------CGCC--------UGGCGU------GGGUGG- -5'
33276 3' -63.1 NC_007605.1 + 60955 0.69 0.449078
Target:  5'- aGGgcgGGGGCCccuGgGGGCUGUcguCCCACg -3'
miRNA:   3'- -CCa--CCCCGGu--CgCCUGGCGu--GGGUGg -5'
33276 3' -63.1 NC_007605.1 + 2922 0.69 0.456831
Target:  5'- -uUGGGGCCauuccagccauggAGCGGACUGacgGCCCcuCCg -3'
miRNA:   3'- ccACCCCGG-------------UCGCCUGGCg--UGGGu-GG- -5'
33276 3' -63.1 NC_007605.1 + 50409 0.69 0.457697
Target:  5'- cGUGGccuuuGGCa--CGGGCCugGCACCCACCg -3'
miRNA:   3'- cCACC-----CCGgucGCCUGG--CGUGGGUGG- -5'
33276 3' -63.1 NC_007605.1 + 61099 0.69 0.457697
Target:  5'- --aGGGGCUguggacauaGGcCGGAuCCGCGCgCGCCg -3'
miRNA:   3'- ccaCCCCGG---------UC-GCCU-GGCGUGgGUGG- -5'
33276 3' -63.1 NC_007605.1 + 62373 0.69 0.457697
Target:  5'- aGGUGgccguuGGGCCAGa-GACCGCGagcaccucCCCGCUg -3'
miRNA:   3'- -CCAC------CCCGGUCgcCUGGCGU--------GGGUGG- -5'
33276 3' -63.1 NC_007605.1 + 151022 0.69 0.457697
Target:  5'- aGGcccgGGGGCUGGCGaGGCgGCGUCCGCg -3'
miRNA:   3'- -CCa---CCCCGGUCGC-CUGgCGUGGGUGg -5'
33276 3' -63.1 NC_007605.1 + 95086 0.69 0.466404
Target:  5'- gGGaUGGGGCCGGaggcaGGGCCGaaaACCgaggacgaggaaCACCc -3'
miRNA:   3'- -CC-ACCCCGGUCg----CCUGGCg--UGG------------GUGG- -5'
33276 3' -63.1 NC_007605.1 + 5002 0.69 0.481399
Target:  5'- -aUGGGGCCAGgGacucugcccuggcaGGCCGUG-CCACCg -3'
miRNA:   3'- ccACCCCGGUCgC--------------CUGGCGUgGGUGG- -5'
33276 3' -63.1 NC_007605.1 + 40091 0.69 0.484069
Target:  5'- gGGUGGGu---GCGGuCCGCuggcCCCACCc -3'
miRNA:   3'- -CCACCCcgguCGCCuGGCGu---GGGUGG- -5'
33276 3' -63.1 NC_007605.1 + 89815 0.68 0.502049
Target:  5'- aGGagGaGGGCgGGUGGcaGCCGCGgCCAUCa -3'
miRNA:   3'- -CCa-C-CCCGgUCGCC--UGGCGUgGGUGG- -5'
33276 3' -63.1 NC_007605.1 + 50732 0.68 0.502049
Target:  5'- -cUGGGGuCCGGCuuGGCCGC-CCCGgCg -3'
miRNA:   3'- ccACCCC-GGUCGc-CUGGCGuGGGUgG- -5'
33276 3' -63.1 NC_007605.1 + 114569 0.68 0.502049
Target:  5'- uGUGGuGGCCAgGUGGACgcaGUGCCCGUCa -3'
miRNA:   3'- cCACC-CCGGU-CGCCUGg--CGUGGGUGG- -5'
33276 3' -63.1 NC_007605.1 + 91606 0.68 0.508411
Target:  5'- gGGUGGGGgaauauggguCUcucaucgcucucuuGGUGGACCGCugCUAUCc -3'
miRNA:   3'- -CCACCCC----------GG--------------UCGCCUGGCGugGGUGG- -5'
33276 3' -63.1 NC_007605.1 + 142890 0.68 0.510235
Target:  5'- --cGGGGCagcgaccCAGCGGACCcggugggcCACCCgGCCg -3'
miRNA:   3'- ccaCCCCG-------GUCGCCUGGc-------GUGGG-UGG- -5'
33276 3' -63.1 NC_007605.1 + 39806 0.68 0.511148
Target:  5'- gGGUGGGGgCguGGUccccuGGACCccaGC-CCCGCCg -3'
miRNA:   3'- -CCACCCCgG--UCG-----CCUGG---CGuGGGUGG- -5'
33276 3' -63.1 NC_007605.1 + 55930 0.68 0.511148
Target:  5'- --aGGGGCCAGgGGAuaCCGCucauaUCACUa -3'
miRNA:   3'- ccaCCCCGGUCgCCU--GGCGug---GGUGG- -5'
33276 3' -63.1 NC_007605.1 + 59187 0.68 0.511148
Target:  5'- cGGUGGGGCgGGgaGGACgccuUGuCGCCCcCCu -3'
miRNA:   3'- -CCACCCCGgUCg-CCUG----GC-GUGGGuGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.