miRNA display CGI


Results 101 - 120 of 293 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33276 3' -63.1 NC_007605.1 + 159482 0.68 0.520315
Target:  5'- --aGGGcGCCGGaCGGGCCGgGCUCucguGCCc -3'
miRNA:   3'- ccaCCC-CGGUC-GCCUGGCgUGGG----UGG- -5'
33276 3' -63.1 NC_007605.1 + 141872 0.68 0.520315
Target:  5'- --cGGGGCagcggaccCAGCGGACCcggugggcCACCCgGCCg -3'
miRNA:   3'- ccaCCCCG--------GUCGCCUGGc-------GUGGG-UGG- -5'
33276 3' -63.1 NC_007605.1 + 141668 0.68 0.520315
Target:  5'- --cGGGGCagcggaccCAGCGGACCcggugggcCACCCgGCCg -3'
miRNA:   3'- ccaCCCCG--------GUCGCCUGGc-------GUGGG-UGG- -5'
33276 3' -63.1 NC_007605.1 + 141770 0.68 0.520315
Target:  5'- --cGGGGCagcggaccCAGCGGACCcggugggcCACCCgGCCg -3'
miRNA:   3'- ccaCCCCG--------GUCGCCUGGc-------GUGGG-UGG- -5'
33276 3' -63.1 NC_007605.1 + 60641 0.68 0.520315
Target:  5'- aGGU-GGGCCaggcaAGCGGuggugcuuCCGcCGCCCGCUc -3'
miRNA:   3'- -CCAcCCCGG-----UCGCCu-------GGC-GUGGGUGG- -5'
33276 3' -63.1 NC_007605.1 + 141464 0.68 0.520315
Target:  5'- --cGGGGCagcggaccCAGCGGACCcggugggcCACCCgGCCg -3'
miRNA:   3'- ccaCCCCG--------GUCGCCUGGc-------GUGGG-UGG- -5'
33276 3' -63.1 NC_007605.1 + 141566 0.68 0.520315
Target:  5'- --cGGGGCagcggaccCAGCGGACCcggugggcCACCCgGCCg -3'
miRNA:   3'- ccaCCCCG--------GUCGCCUGGc-------GUGGG-UGG- -5'
33276 3' -63.1 NC_007605.1 + 141973 0.68 0.520315
Target:  5'- --cGGGGCagcggaccCAGCGGACCcggugggcCACCCgGCCg -3'
miRNA:   3'- ccaCCCCG--------GUCGCCUGGc-------GUGGG-UGG- -5'
33276 3' -63.1 NC_007605.1 + 142075 0.68 0.520315
Target:  5'- --cGGGGCagcggaccCAGCGGACCcggugggcCACCCgGCCg -3'
miRNA:   3'- ccaCCCCG--------GUCGCCUGGc-------GUGGG-UGG- -5'
33276 3' -63.1 NC_007605.1 + 143298 0.68 0.520315
Target:  5'- --cGGGGCagcggaccCAGCGGACCcggugggcCACCCgGCCg -3'
miRNA:   3'- ccaCCCCG--------GUCGCCUGGc-------GUGGG-UGG- -5'
33276 3' -63.1 NC_007605.1 + 142483 0.68 0.520315
Target:  5'- --cGGGGCagcggaccCAGCGGACCcggugggcCACCCgGCCg -3'
miRNA:   3'- ccaCCCCG--------GUCGCCUGGc-------GUGGG-UGG- -5'
33276 3' -63.1 NC_007605.1 + 143196 0.68 0.520315
Target:  5'- --cGGGGCagcggaccCAGCGGACCcggugggcCACCCgGCCg -3'
miRNA:   3'- ccaCCCCG--------GUCGCCUGGc-------GUGGG-UGG- -5'
33276 3' -63.1 NC_007605.1 + 142687 0.68 0.520315
Target:  5'- --cGGGGCagcggaccCAGCGGACCcggugggcCACCCgGCCg -3'
miRNA:   3'- ccaCCCCG--------GUCGCCUGGc-------GUGGG-UGG- -5'
33276 3' -63.1 NC_007605.1 + 142789 0.68 0.520315
Target:  5'- --cGGGGCagcggaccCAGCGGACCcggugggcCACCCgGCCg -3'
miRNA:   3'- ccaCCCCG--------GUCGCCUGGc-------GUGGG-UGG- -5'
33276 3' -63.1 NC_007605.1 + 142279 0.68 0.520315
Target:  5'- --cGGGGCagcggaccCAGCGGACCcggugggcCACCCgGCCg -3'
miRNA:   3'- ccaCCCCG--------GUCGCCUGGc-------GUGGG-UGG- -5'
33276 3' -63.1 NC_007605.1 + 142992 0.68 0.520315
Target:  5'- --cGGGGCagcggaccCAGCGGACCcggugggcCACCCgGCCg -3'
miRNA:   3'- ccaCCCCG--------GUCGCCUGGc-------GUGGG-UGG- -5'
33276 3' -63.1 NC_007605.1 + 143094 0.68 0.520315
Target:  5'- --cGGGGCagcggaccCAGCGGACCcggugggcCACCCgGCCg -3'
miRNA:   3'- ccaCCCCG--------GUCGCCUGGc-------GUGGG-UGG- -5'
33276 3' -63.1 NC_007605.1 + 142381 0.68 0.520315
Target:  5'- --cGGGGCagcggaccCAGCGGACCcggugggcCACCCgGCCg -3'
miRNA:   3'- ccaCCCCG--------GUCGCCUGGc-------GUGGG-UGG- -5'
33276 3' -63.1 NC_007605.1 + 142585 0.68 0.520315
Target:  5'- --cGGGGCagcggaccCAGCGGACCcggugggcCACCCgGCCg -3'
miRNA:   3'- ccaCCCCG--------GUCGCCUGGc-------GUGGG-UGG- -5'
33276 3' -63.1 NC_007605.1 + 142177 0.68 0.520315
Target:  5'- --cGGGGCagcggaccCAGCGGACCcggugggcCACCCgGCCg -3'
miRNA:   3'- ccaCCCCG--------GUCGCCUGGc-------GUGGG-UGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.