miRNA display CGI


Results 81 - 100 of 293 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33276 3' -63.1 NC_007605.1 + 22418 0.66 0.62431
Target:  5'- -cUGGGGCCGccCGGGCUGCcgggguCCCuCCg -3'
miRNA:   3'- ccACCCCGGUc-GCCUGGCGu-----GGGuGG- -5'
33276 3' -63.1 NC_007605.1 + 28556 0.66 0.62431
Target:  5'- -cUGGGGCCGccCGGGCUGCcgggguCCCuCCg -3'
miRNA:   3'- ccACCCCGGUc-GCCUGGCGu-----GGGuGG- -5'
33276 3' -63.1 NC_007605.1 + 34694 0.66 0.62431
Target:  5'- -cUGGGGCCGccCGGGCUGCcgggguCCCuCCg -3'
miRNA:   3'- ccACCCCGGUc-GCCUGGCGu-----GGGuGG- -5'
33276 3' -63.1 NC_007605.1 + 13211 0.66 0.62431
Target:  5'- -cUGGGGCCGccCGGGCUGCcgggguCCCuCCg -3'
miRNA:   3'- ccACCCCGGUc-GCCUGGCGu-----GGGuGG- -5'
33276 3' -63.1 NC_007605.1 + 31625 0.66 0.62431
Target:  5'- -cUGGGGCCGccCGGGCUGCcgggguCCCuCCg -3'
miRNA:   3'- ccACCCCGGUc-GCCUGGCGu-----GGGuGG- -5'
33276 3' -63.1 NC_007605.1 + 25487 0.66 0.62431
Target:  5'- -cUGGGGCCGccCGGGCUGCcgggguCCCuCCg -3'
miRNA:   3'- ccACCCCGGUc-GCCUGGCGu-----GGGuGG- -5'
33276 3' -63.1 NC_007605.1 + 25052 0.66 0.62431
Target:  5'- --cGGGGCCAGCcgccgGGGuuGguUCUGCCc -3'
miRNA:   3'- ccaCCCCGGUCG-----CCUggCguGGGUGG- -5'
33276 3' -63.1 NC_007605.1 + 21983 0.66 0.62431
Target:  5'- --cGGGGCCAGCcgccgGGGuuGguUCUGCCc -3'
miRNA:   3'- ccaCCCCGGUCG-----CCUggCguGGGUGG- -5'
33276 3' -63.1 NC_007605.1 + 50611 0.66 0.62431
Target:  5'- cGGUGGGuGCCA--GGcCCGUGCCaaagGCCa -3'
miRNA:   3'- -CCACCC-CGGUcgCCuGGCGUGGg---UGG- -5'
33276 3' -63.1 NC_007605.1 + 16280 0.66 0.62431
Target:  5'- -cUGGGGCCGccCGGGCUGCcgggguCCCuCCg -3'
miRNA:   3'- ccACCCCGGUc-GCCUGGCGu-----GGGuGG- -5'
33276 3' -63.1 NC_007605.1 + 103256 0.66 0.62431
Target:  5'- cGGcgGGGGCUGacgccGCuGGGuuGUugCCGCCg -3'
miRNA:   3'- -CCa-CCCCGGU-----CG-CCUggCGugGGUGG- -5'
33276 3' -63.1 NC_007605.1 + 155981 0.67 0.614713
Target:  5'- aGGgGGGGCUgaGGCcc-CCGCACauCCACCa -3'
miRNA:   3'- -CCaCCCCGG--UCGccuGGCGUG--GGUGG- -5'
33276 3' -63.1 NC_007605.1 + 59775 0.67 0.614713
Target:  5'- ---cGGGCCAGcCGGgaccugucaccACCGC-CCCACg -3'
miRNA:   3'- ccacCCCGGUC-GCC-----------UGGCGuGGGUGg -5'
33276 3' -63.1 NC_007605.1 + 62183 0.67 0.614713
Target:  5'- --cGGaGGCCAGCGGGggacaaaCGC-CCC-CCg -3'
miRNA:   3'- ccaCC-CCGGUCGCCUg------GCGuGGGuGG- -5'
33276 3' -63.1 NC_007605.1 + 153542 0.67 0.608959
Target:  5'- uGGaaGGGCCGGUGGgagaggaggcugGCCGCcuccuuuacccgggcAUCCGCCa -3'
miRNA:   3'- -CCacCCCGGUCGCC------------UGGCG---------------UGGGUGG- -5'
33276 3' -63.1 NC_007605.1 + 1833 0.67 0.605126
Target:  5'- -aUGGGGUCGGUGGG-CGCuCCuCACUu -3'
miRNA:   3'- ccACCCCGGUCGCCUgGCGuGG-GUGG- -5'
33276 3' -63.1 NC_007605.1 + 53137 0.67 0.605126
Target:  5'- --aGGGuGCCGGCGuauuucgccGGCC-CugCCGCCg -3'
miRNA:   3'- ccaCCC-CGGUCGC---------CUGGcGugGGUGG- -5'
33276 3' -63.1 NC_007605.1 + 59391 0.67 0.605126
Target:  5'- aGG-GGGGCgacaaGGCGuccuccCCGC-CCCACCg -3'
miRNA:   3'- -CCaCCCCGg----UCGCcu----GGCGuGGGUGG- -5'
33276 3' -63.1 NC_007605.1 + 61601 0.67 0.602253
Target:  5'- uGUGGGGgCGGCGGcggacccuugggacGCCGUaACCC-CUc -3'
miRNA:   3'- cCACCCCgGUCGCC--------------UGGCG-UGGGuGG- -5'
33276 3' -63.1 NC_007605.1 + 104514 0.67 0.599382
Target:  5'- cGGUGGGGCUgagaccaugcucaguGGCcgucuggcaggGGGCCGgGCgCGCUc -3'
miRNA:   3'- -CCACCCCGG---------------UCG-----------CCUGGCgUGgGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.