Results 81 - 100 of 293 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33276 | 3' | -63.1 | NC_007605.1 | + | 38466 | 0.66 | 0.633914 |
Target: 5'- gGGUGGGG--GGUGGccccgcugggcACCGCuGCgCCGCCg -3' miRNA: 3'- -CCACCCCggUCGCC-----------UGGCG-UG-GGUGG- -5' |
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33276 | 3' | -63.1 | NC_007605.1 | + | 38507 | 0.71 | 0.345966 |
Target: 5'- --cGGGG-CAGCGGcCCaGCggACCCACCg -3' miRNA: 3'- ccaCCCCgGUCGCCuGG-CG--UGGGUGG- -5' |
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33276 | 3' | -63.1 | NC_007605.1 | + | 38560 | 0.74 | 0.255179 |
Target: 5'- cGGUGGGuCCGcUGGGCCGCugCC-CCg -3' miRNA: 3'- -CCACCCcGGUcGCCUGGCGugGGuGG- -5' |
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33276 | 3' | -63.1 | NC_007605.1 | + | 38591 | 0.66 | 0.633914 |
Target: 5'- gGGUGGGG--GGUGGccccgcugggcACCGCuGCgCCGCCg -3' miRNA: 3'- -CCACCCCggUCGCC-----------UGGCG-UG-GGUGG- -5' |
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33276 | 3' | -63.1 | NC_007605.1 | + | 38632 | 0.71 | 0.345966 |
Target: 5'- --cGGGG-CAGCGGcCCaGCggACCCACCg -3' miRNA: 3'- ccaCCCCgGUCGCCuGG-CG--UGGGUGG- -5' |
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33276 | 3' | -63.1 | NC_007605.1 | + | 38685 | 0.74 | 0.255179 |
Target: 5'- cGGUGGGuCCGcUGGGCCGCugCC-CCg -3' miRNA: 3'- -CCACCCcGGUcGCCUGGCGugGGuGG- -5' |
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33276 | 3' | -63.1 | NC_007605.1 | + | 38716 | 0.66 | 0.633914 |
Target: 5'- gGGUGGGG--GGUGGccccgcugggcACCGCuGCgCCGCCg -3' miRNA: 3'- -CCACCCCggUCGCC-----------UGGCG-UG-GGUGG- -5' |
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33276 | 3' | -63.1 | NC_007605.1 | + | 38757 | 0.71 | 0.345966 |
Target: 5'- --cGGGG-CAGCGGcCCaGCggACCCACCg -3' miRNA: 3'- ccaCCCCgGUCGCCuGG-CG--UGGGUGG- -5' |
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33276 | 3' | -63.1 | NC_007605.1 | + | 38810 | 0.74 | 0.255179 |
Target: 5'- cGGUGGGuCCGcUGGGCCGCugCC-CCg -3' miRNA: 3'- -CCACCCcGGUcGCCUGGCGugGGuGG- -5' |
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33276 | 3' | -63.1 | NC_007605.1 | + | 38841 | 0.66 | 0.633914 |
Target: 5'- gGGUGGGG--GGUGGccccgcugggcACCGCuGCgCCGCCg -3' miRNA: 3'- -CCACCCCggUCGCC-----------UGGCG-UG-GGUGG- -5' |
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33276 | 3' | -63.1 | NC_007605.1 | + | 38882 | 0.71 | 0.345966 |
Target: 5'- --cGGGG-CAGCGGcCCaGCggACCCACCg -3' miRNA: 3'- ccaCCCCgGUCGCCuGG-CG--UGGGUGG- -5' |
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33276 | 3' | -63.1 | NC_007605.1 | + | 38934 | 0.74 | 0.255179 |
Target: 5'- cGGUGGGuCCGcUGGGCCGCugCC-CCg -3' miRNA: 3'- -CCACCCcGGUcGCCUGGCGugGGuGG- -5' |
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33276 | 3' | -63.1 | NC_007605.1 | + | 38965 | 0.66 | 0.633914 |
Target: 5'- gGGUGGGG--GGUGGccccgcugggcACCGCuGCgCCGCCg -3' miRNA: 3'- -CCACCCCggUCGCC-----------UGGCG-UG-GGUGG- -5' |
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33276 | 3' | -63.1 | NC_007605.1 | + | 39007 | 0.71 | 0.345966 |
Target: 5'- --cGGGG-CAGCGGcCCaGCggACCCACCg -3' miRNA: 3'- ccaCCCCgGUCGCCuGG-CG--UGGGUGG- -5' |
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33276 | 3' | -63.1 | NC_007605.1 | + | 39059 | 0.74 | 0.255179 |
Target: 5'- cGGUGGGuCCGcUGGGCCGCugCC-CCg -3' miRNA: 3'- -CCACCCcGGUcGCCUGGCGugGGuGG- -5' |
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33276 | 3' | -63.1 | NC_007605.1 | + | 39090 | 0.66 | 0.633914 |
Target: 5'- gGGUGGGG--GGUGGccccgcugggcACCGCuGCgCCGCCg -3' miRNA: 3'- -CCACCCCggUCGCC-----------UGGCG-UG-GGUGG- -5' |
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33276 | 3' | -63.1 | NC_007605.1 | + | 39131 | 0.71 | 0.345966 |
Target: 5'- --cGGGG-CAGCGGcCCaGCggACCCACCg -3' miRNA: 3'- ccaCCCCgGUCGCCuGG-CG--UGGGUGG- -5' |
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33276 | 3' | -63.1 | NC_007605.1 | + | 39184 | 0.74 | 0.255179 |
Target: 5'- cGGUGGGuCCGcUGGGCCGCugCC-CCg -3' miRNA: 3'- -CCACCCcGGUcGCCUGGCGugGGuGG- -5' |
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33276 | 3' | -63.1 | NC_007605.1 | + | 39215 | 0.66 | 0.633914 |
Target: 5'- gGGUGGGG--GGUGGccccgcugggcACCGCuGCgCCGCCg -3' miRNA: 3'- -CCACCCCggUCGCC-----------UGGCG-UG-GGUGG- -5' |
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33276 | 3' | -63.1 | NC_007605.1 | + | 39256 | 0.71 | 0.345966 |
Target: 5'- --cGGGG-CAGCGGcCCaGCggACCCACCg -3' miRNA: 3'- ccaCCCCgGUCGCCuGG-CG--UGGGUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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