miRNA display CGI


Results 101 - 120 of 293 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33276 3' -63.1 NC_007605.1 + 39309 0.74 0.255179
Target:  5'- cGGUGGGuCCGcUGGGCCGCugCC-CCg -3'
miRNA:   3'- -CCACCCcGGUcGCCUGGCGugGGuGG- -5'
33276 3' -63.1 NC_007605.1 + 39340 0.66 0.633914
Target:  5'- gGGUGGGG--GGUGGccccgcugggcACCGCuGCgCCGCCg -3'
miRNA:   3'- -CCACCCCggUCGCC-----------UGGCG-UG-GGUGG- -5'
33276 3' -63.1 NC_007605.1 + 39381 0.71 0.345966
Target:  5'- --cGGGG-CAGCGGcCCaGCggACCCACCg -3'
miRNA:   3'- ccaCCCCgGUCGCCuGG-CG--UGGGUGG- -5'
33276 3' -63.1 NC_007605.1 + 39434 0.74 0.255179
Target:  5'- cGGUGGGuCCGcUGGGCCGCugCC-CCg -3'
miRNA:   3'- -CCACCCcGGUcGCCUGGCGugGGuGG- -5'
33276 3' -63.1 NC_007605.1 + 39465 0.66 0.633914
Target:  5'- gGGUGGGG--GGUGGccccgcugggcACCGCuGCgCCGCCg -3'
miRNA:   3'- -CCACCCCggUCGCC-----------UGGCG-UG-GGUGG- -5'
33276 3' -63.1 NC_007605.1 + 39506 0.71 0.345966
Target:  5'- --cGGGG-CAGCGGcCCaGCggACCCACCg -3'
miRNA:   3'- ccaCCCCgGUCGCCuGG-CG--UGGGUGG- -5'
33276 3' -63.1 NC_007605.1 + 39559 0.74 0.255179
Target:  5'- cGGUGGGuCCGcUGGGCCGCugCC-CCg -3'
miRNA:   3'- -CCACCCcGGUcGCCUGGCGugGGuGG- -5'
33276 3' -63.1 NC_007605.1 + 39590 0.66 0.633914
Target:  5'- gGGUGGGG--GGUGGccccgcugggcACCGCuGCgCCGCCg -3'
miRNA:   3'- -CCACCCCggUCGCC-----------UGGCG-UG-GGUGG- -5'
33276 3' -63.1 NC_007605.1 + 39631 0.71 0.345966
Target:  5'- --cGGGG-CAGCGGcCCaGCggACCCACCg -3'
miRNA:   3'- ccaCCCCgGUCGCCuGG-CG--UGGGUGG- -5'
33276 3' -63.1 NC_007605.1 + 39684 0.74 0.255179
Target:  5'- cGGUGGGuCCGcUGGGCCGCugCC-CCg -3'
miRNA:   3'- -CCACCCcGGUcGCCUGGCGugGGuGG- -5'
33276 3' -63.1 NC_007605.1 + 39715 0.66 0.633914
Target:  5'- gGGUGGGG--GGUGGccccgcugggcACCGCuGCgCCGCCg -3'
miRNA:   3'- -CCACCCCggUCGCC-----------UGGCG-UG-GGUGG- -5'
33276 3' -63.1 NC_007605.1 + 39756 0.71 0.345966
Target:  5'- --cGGGG-CAGCGGcCCaGCggACCCACCg -3'
miRNA:   3'- ccaCCCCgGUCGCCuGG-CG--UGGGUGG- -5'
33276 3' -63.1 NC_007605.1 + 39806 0.68 0.511148
Target:  5'- gGGUGGGGgCguGGUccccuGGACCccaGC-CCCGCCg -3'
miRNA:   3'- -CCACCCCgG--UCG-----CCUGG---CGuGGGUGG- -5'
33276 3' -63.1 NC_007605.1 + 39878 0.71 0.345966
Target:  5'- -cUGGGGCUccucuGGgGGucGCUGCAUCCGCCg -3'
miRNA:   3'- ccACCCCGG-----UCgCC--UGGCGUGGGUGG- -5'
33276 3' -63.1 NC_007605.1 + 39881 0.71 0.345966
Target:  5'- --cGGGG-CAGCGGcCCaGCggACCCACCg -3'
miRNA:   3'- ccaCCCCgGUCGCCuGG-CG--UGGGUGG- -5'
33276 3' -63.1 NC_007605.1 + 40008 0.78 0.142209
Target:  5'- gGGcUGGGGuCCAGgGGACCacGCcCCCACCc -3'
miRNA:   3'- -CC-ACCCC-GGUCgCCUGG--CGuGGGUGG- -5'
33276 3' -63.1 NC_007605.1 + 40091 0.69 0.484069
Target:  5'- gGGUGGGu---GCGGuCCGCuggcCCCACCc -3'
miRNA:   3'- -CCACCCcgguCGCCuGGCGu---GGGUGG- -5'
33276 3' -63.1 NC_007605.1 + 40122 0.67 0.557575
Target:  5'- ---cGGGCCagcagagcaAGCGGACCaCGCCCAUUc -3'
miRNA:   3'- ccacCCCGG---------UCGCCUGGcGUGGGUGG- -5'
33276 3' -63.1 NC_007605.1 + 40241 0.7 0.44055
Target:  5'- --aGGGGuCCAGgGGgcaGCCGCgGCCCAgCg -3'
miRNA:   3'- ccaCCCC-GGUCgCC---UGGCG-UGGGUgG- -5'
33276 3' -63.1 NC_007605.1 + 40289 1.11 0.000605
Target:  5'- gGGUGGGGCCAGCGGACCGCACCCACCc -3'
miRNA:   3'- -CCACCCCGGUCGCCUGGCGUGGGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.