miRNA display CGI


Results 121 - 140 of 293 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33276 3' -63.1 NC_007605.1 + 40315 0.7 0.423773
Target:  5'- cGGcgGGGGUgGGgGGugCGCuCCCagGCCg -3'
miRNA:   3'- -CCa-CCCCGgUCgCCugGCGuGGG--UGG- -5'
33276 3' -63.1 NC_007605.1 + 40413 0.7 0.3914
Target:  5'- ---cGGGCCGGCugggaGGugUGCACCCcCCg -3'
miRNA:   3'- ccacCCCGGUCG-----CCugGCGUGGGuGG- -5'
33276 3' -63.1 NC_007605.1 + 40448 0.68 0.538835
Target:  5'- --cGGGGCgCGcUGGGCCGCGgCUGCCc -3'
miRNA:   3'- ccaCCCCG-GUcGCCUGGCGUgGGUGG- -5'
33276 3' -63.1 NC_007605.1 + 40522 0.68 0.54818
Target:  5'- --aGGGuCCGGCcugGGAgCGCACCCcCCa -3'
miRNA:   3'- ccaCCCcGGUCG---CCUgGCGUGGGuGG- -5'
33276 3' -63.1 NC_007605.1 + 43565 0.67 0.586013
Target:  5'- --gGGGGCC--UGGACUGUgguAUCCACCu -3'
miRNA:   3'- ccaCCCCGGucGCCUGGCG---UGGGUGG- -5'
33276 3' -63.1 NC_007605.1 + 48464 0.72 0.317842
Target:  5'- --gGGGGCCGGgGGGCC-CugCCugaGCCg -3'
miRNA:   3'- ccaCCCCGGUCgCCUGGcGugGG---UGG- -5'
33276 3' -63.1 NC_007605.1 + 48805 0.68 0.529545
Target:  5'- cGGUGGGcuGCCAGaGGcuggcugagccACCgaGCGCCCGCUc -3'
miRNA:   3'- -CCACCC--CGGUCgCC-----------UGG--CGUGGGUGG- -5'
33276 3' -63.1 NC_007605.1 + 49007 0.66 0.672247
Target:  5'- cGGUGGcucaGCCAGCcucuGGCa--GCCCACCg -3'
miRNA:   3'- -CCACCc---CGGUCGc---CUGgcgUGGGUGG- -5'
33276 3' -63.1 NC_007605.1 + 49724 0.66 0.65311
Target:  5'- --gGGGGUC-GCGGACUGgGCUacgGCCg -3'
miRNA:   3'- ccaCCCCGGuCGCCUGGCgUGGg--UGG- -5'
33276 3' -63.1 NC_007605.1 + 50355 0.73 0.289567
Target:  5'- cGGcGGGGCCgcGGUGGGCUgcccccgaggacggGCGCCgGCCg -3'
miRNA:   3'- -CCaCCCCGG--UCGCCUGG--------------CGUGGgUGG- -5'
33276 3' -63.1 NC_007605.1 + 50409 0.69 0.457697
Target:  5'- cGUGGccuuuGGCa--CGGGCCugGCACCCACCg -3'
miRNA:   3'- cCACC-----CCGgucGCCUGG--CGUGGGUGG- -5'
33276 3' -63.1 NC_007605.1 + 50552 0.7 0.399341
Target:  5'- --cGGGGgCAGCccACCGCGgcCCCGCCg -3'
miRNA:   3'- ccaCCCCgGUCGccUGGCGU--GGGUGG- -5'
33276 3' -63.1 NC_007605.1 + 50581 0.72 0.317842
Target:  5'- cGG-GGGcGCUGGCGGcCgGCGCCCGuCCu -3'
miRNA:   3'- -CCaCCC-CGGUCGCCuGgCGUGGGU-GG- -5'
33276 3' -63.1 NC_007605.1 + 50611 0.66 0.62431
Target:  5'- cGGUGGGuGCCA--GGcCCGUGCCaaagGCCa -3'
miRNA:   3'- -CCACCC-CGGUcgCCuGGCGUGGg---UGG- -5'
33276 3' -63.1 NC_007605.1 + 50732 0.68 0.502049
Target:  5'- -cUGGGGuCCGGCuuGGCCGC-CCCGgCg -3'
miRNA:   3'- ccACCCC-GGUCGc-CUGGCGuGGGUgG- -5'
33276 3' -63.1 NC_007605.1 + 50905 0.74 0.2331
Target:  5'- aGG-GGGGCCGggaagaagccGCGGAgauucggcccuCCGcCACCCGCCu -3'
miRNA:   3'- -CCaCCCCGGU----------CGCCU-----------GGC-GUGGGUGG- -5'
33276 3' -63.1 NC_007605.1 + 53137 0.67 0.605126
Target:  5'- --aGGGuGCCGGCGuauuucgccGGCC-CugCCGCCg -3'
miRNA:   3'- ccaCCC-CGGUCGC---------CUGGcGugGGUGG- -5'
33276 3' -63.1 NC_007605.1 + 55930 0.68 0.511148
Target:  5'- --aGGGGCCAGgGGAuaCCGCucauaUCACUa -3'
miRNA:   3'- ccaCCCCGGUCgCCU--GGCGug---GGUGG- -5'
33276 3' -63.1 NC_007605.1 + 58057 0.67 0.586013
Target:  5'- --cGGGGCC-GCGGagGCCGgGgCCGCg -3'
miRNA:   3'- ccaCCCCGGuCGCC--UGGCgUgGGUGg -5'
33276 3' -63.1 NC_007605.1 + 58087 0.67 0.586013
Target:  5'- --cGGGGCC-GCGGagGCCGgGgCCGCg -3'
miRNA:   3'- ccaCCCCGGuCGCC--UGGCgUgGGUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.