miRNA display CGI


Results 41 - 60 of 293 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33276 3' -63.1 NC_007605.1 + 151142 0.67 0.595558
Target:  5'- uGUGGGGaUCGGCaaaGAUUGCGCCCAg- -3'
miRNA:   3'- cCACCCC-GGUCGc--CUGGCGUGGGUgg -5'
33276 3' -63.1 NC_007605.1 + 151022 0.69 0.457697
Target:  5'- aGGcccgGGGGCUGGCGaGGCgGCGUCCGCg -3'
miRNA:   3'- -CCa---CCCCGGUCGC-CUGgCGUGGGUGg -5'
33276 3' -63.1 NC_007605.1 + 150594 0.66 0.633914
Target:  5'- -aUGGGugcugcgcccgcGCguGUGGACCGCccACUCGCCc -3'
miRNA:   3'- ccACCC------------CGguCGCCUGGCG--UGGGUGG- -5'
33276 3' -63.1 NC_007605.1 + 150405 0.7 0.407385
Target:  5'- -uUGGGGCC-GC--ACCGuCGCCCGCCc -3'
miRNA:   3'- ccACCCCGGuCGccUGGC-GUGGGUGG- -5'
33276 3' -63.1 NC_007605.1 + 150331 0.7 0.431276
Target:  5'- -cUGGGGCCgaugugcAGCGGuuUGUGCCCGCa -3'
miRNA:   3'- ccACCCCGG-------UCGCCugGCGUGGGUGg -5'
33276 3' -63.1 NC_007605.1 + 146215 0.74 0.227837
Target:  5'- uGGUGGGGCCuuGGUGGGCUGCAUaaGgCa -3'
miRNA:   3'- -CCACCCCGG--UCGCCUGGCGUGggUgG- -5'
33276 3' -63.1 NC_007605.1 + 143337 0.67 0.557575
Target:  5'- --aGGGuCCGGCcugGGAgCGCACCC-CCa -3'
miRNA:   3'- ccaCCCcGGUCG---CCUgGCGUGGGuGG- -5'
33276 3' -63.1 NC_007605.1 + 143298 0.68 0.520315
Target:  5'- --cGGGGCagcggaccCAGCGGACCcggugggcCACCCgGCCg -3'
miRNA:   3'- ccaCCCCG--------GUCGCCUGGc-------GUGGG-UGG- -5'
33276 3' -63.1 NC_007605.1 + 143228 0.7 0.3914
Target:  5'- ---cGGGCCGGCugggaGGugUGCACCCcCCg -3'
miRNA:   3'- ccacCCCGGUCG-----CCugGCGUGGGuGG- -5'
33276 3' -63.1 NC_007605.1 + 143196 0.68 0.520315
Target:  5'- --cGGGGCagcggaccCAGCGGACCcggugggcCACCCgGCCg -3'
miRNA:   3'- ccaCCCCG--------GUCGCCUGGc-------GUGGG-UGG- -5'
33276 3' -63.1 NC_007605.1 + 143094 0.68 0.520315
Target:  5'- --cGGGGCagcggaccCAGCGGACCcggugggcCACCCgGCCg -3'
miRNA:   3'- ccaCCCCG--------GUCGCCUGGc-------GUGGG-UGG- -5'
33276 3' -63.1 NC_007605.1 + 143054 0.66 0.666515
Target:  5'- gGGUccGGGGUuccggcccuggagcuCGGgGGGCgGCcgggugGCCCACCg -3'
miRNA:   3'- -CCA--CCCCG---------------GUCgCCUGgCG------UGGGUGG- -5'
33276 3' -63.1 NC_007605.1 + 142992 0.68 0.520315
Target:  5'- --cGGGGCagcggaccCAGCGGACCcggugggcCACCCgGCCg -3'
miRNA:   3'- ccaCCCCG--------GUCGCCUGGc-------GUGGG-UGG- -5'
33276 3' -63.1 NC_007605.1 + 142952 0.66 0.666515
Target:  5'- gGGUccGGGGUuccggcccuggagcuCGGgGGGCgGCcgggugGCCCACCg -3'
miRNA:   3'- -CCA--CCCCG---------------GUCgCCUGgCG------UGGGUGG- -5'
33276 3' -63.1 NC_007605.1 + 142890 0.68 0.510235
Target:  5'- --cGGGGCagcgaccCAGCGGACCcggugggcCACCCgGCCg -3'
miRNA:   3'- ccaCCCCG-------GUCGCCUGGc-------GUGGG-UGG- -5'
33276 3' -63.1 NC_007605.1 + 142850 0.66 0.666515
Target:  5'- gGGUccGGGGUuccggcccuggagcuCGGgGGGCgGCcgggugGCCCACCg -3'
miRNA:   3'- -CCA--CCCCG---------------GUCgCCUGgCG------UGGGUGG- -5'
33276 3' -63.1 NC_007605.1 + 142789 0.68 0.520315
Target:  5'- --cGGGGCagcggaccCAGCGGACCcggugggcCACCCgGCCg -3'
miRNA:   3'- ccaCCCCG--------GUCGCCUGGc-------GUGGG-UGG- -5'
33276 3' -63.1 NC_007605.1 + 142748 0.66 0.666515
Target:  5'- gGGUccGGGGUuccggcccuggagcuCGGgGGGCgGCcgggugGCCCACCg -3'
miRNA:   3'- -CCA--CCCCG---------------GUCgCCUGgCG------UGGGUGG- -5'
33276 3' -63.1 NC_007605.1 + 142687 0.68 0.520315
Target:  5'- --cGGGGCagcggaccCAGCGGACCcggugggcCACCCgGCCg -3'
miRNA:   3'- ccaCCCCG--------GUCGCCUGGc-------GUGGG-UGG- -5'
33276 3' -63.1 NC_007605.1 + 142647 0.66 0.666515
Target:  5'- gGGUccGGGGUuccggcccuggagcuCGGgGGGCgGCcgggugGCCCACCg -3'
miRNA:   3'- -CCA--CCCCG---------------GUCgCCUGgCG------UGGGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.